PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_24140V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 675aa MW: 72189.8 Da PI: 6.4913 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.5e-09 | 102 | 126 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tC++G +C++ H+ Pp3c2_24140V3.5.p 102 GQKVCAYYMATRTCSFGVTCRYDHP 126 6789********************8 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG+C+yG++C+F+H++ Pp3c2_24140V3.5.p 158 EPDCAYFMKTGECRYGPQCRFNHPK 182 689********************96 PP | |||||||
3 | zf-CCCH | 22.6 | 1.9e-07 | 222 | 244 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f+ +tG Ck+G+ C+++H++ Pp3c2_24140V3.5.p 222 NCVFYGKTGSCKHGPACRYNHPE 244 79*******************96 PP | |||||||
4 | zf-CCCH | 35.6 | 1.6e-11 | 539 | 565 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f+ +tG+C++G++CkF+H+p Pp3c2_24140V3.5.p 539 PGEPDCTFYIKTGECSFGATCKFHHPP 565 5789*********************97 PP | |||||||
5 | zf-CCCH | 33 | 1e-10 | 595 | 619 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG Ck+G +Ck+ H+p Pp3c2_24140V3.5.p 595 EAPCAYYMKTGACKFGQTCKYDHPP 619 589********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.015 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.202 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-7 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 161 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.026 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 222 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-5 | 538 | 565 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 538 | 566 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-8 | 540 | 565 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 542 | 567 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 544 | 564 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 592 | 620 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 592 | 619 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 595 | 619 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 596 | 620 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 597 | 617 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS 60 ADGAAKRLSD GVTDDMTGPN KKPRSNSSGV SGENGLYPQR PGQKVCAYYM ATRTCSFGVT 120 CRYDHPAWLP PGGIPSWKEV TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH 180 PKEKLEPSNT DDQYSAASSA AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY 240 NHPEIVFPAG GRTGQTLQPQ QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS 300 TTPTYTTAPT AYPVATTYST AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG 360 YPPETPTQSY SQGTPAQSFP PGTPTQGYSQ TRTFSLGTIM QQYTQGTTAL GLCQVQSYPS 420 GTTSQTYPPG TKSHPQQLTY PPAGQQPQCQ EDYTYATQQV SRNGTEYMYS TEQPGQGASD 480 QYATTVYTSE ASGQPSTGDY ACTAAHNSQE YMYAAAQAYH QNVTSVYATP MSLPHPQRPG 540 EPDCTFYIKT GECSFGATCK FHHPPDRIPT GIPKPAKNQG LVKLSLAGLP RRETEAPCAY 600 YMKTGACKFG QTCKYDHPPP QEIIAKAVEQ ARGEIPVSCD VSMPGSNESD SQDATPLPPG 660 TDAPAVTAAC ASST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368795.1 | 0.0 | zinc finger CCCH domain-containing protein 34-like isoform X4 | ||||
TrEMBL | A0A2K1L7Z1 | 0.0 | A0A2K1L7Z1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_32V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-41 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_24140V3.5.p |