PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_24140V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 655aa    MW: 70130.6 Da    PI: 6.3779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_24140V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-0982106226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C ++++t tC++G +C++ H+
  Pp3c2_24140V3.2.p  82 GQKVCAYYMATRTCSFGVTCRYDHP 106
                        6789********************8 PP
2zf-CCCH39.21.2e-12138162327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c2_24140V3.2.p 138 EPDCAYFMKTGECRYGPQCRFNHPK 162
                        689********************96 PP
3zf-CCCH22.61.8e-07202224527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G+ C+++H++
  Pp3c2_24140V3.2.p 202 NCVFYGKTGSCKHGPACRYNHPE 224
                        79*******************96 PP
4zf-CCCH35.61.5e-11519545127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c2_24140V3.2.p 519 PGEPDCTFYIKTGECSFGATCKFHHPP 545
                        5789*********************97 PP
5zf-CCCH33.19.8e-11575599327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG Ck+G +Ck+ H+p
  Pp3c2_24140V3.2.p 575 EAPCAYYMKTGACKFGQTCKYDHPP 599
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.20280108IPR000571Zinc finger, CCCH-type
SMARTSM003560.01580107IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-782106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413135163IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6135162IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5141163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427197225IPR000571Zinc finger, CCCH-type
SMARTSM003560.026197224IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4202224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99518546IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5518545IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8520545IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5522547IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4524544IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812572600IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4572599IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8575599IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5576600IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4577597IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS  60
ADGAAKRLSD GGENGLYPQR PGQKVCAYYM ATRTCSFGVT CRYDHPAWLP PGGIPSWKEV  120
TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH PKEKLEPSNT DDQYSAASSA  180
AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY NHPEIVFPAG GRTGQTLQPQ  240
QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS TTPTYTTAPT AYPVATTYST  300
AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG YPPETPTQSY SQGTPAQSFP  360
PGTPTQGYSQ TRTFSLGTIM QQYTQGTTAL GLCQVQSYPS GTTSQTYPPG TKSHPQQLTY  420
PPAGQQPQCQ EDYTYATQQV SRNGTEYMYS TEQPGQGASD QYATTVYTSE ASGQPSTGDY  480
ACTAAHNSQE YMYAAAQAYH QNVTSVYATP MSLPHPQRPG EPDCTFYIKT GECSFGATCK  540
FHHPPDRIPT GIPKPAKNQG LVKLSLAGLP RRETEAPCAY YMKTGACKFG QTCKYDHPPP  600
QEIIAKAVEQ ARGEIPVSCD VSMPGSNESD SQDATPLPPG TDAPAVTAAC ASST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368795.10.0zinc finger CCCH domain-containing protein 34-like isoform X4
TrEMBLA0A2K1L7Z10.0A0A2K1L7Z1_PHYPA; Uncharacterized protein
STRINGPP1S135_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-41floral homeotic protein (HUA1)