PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_24140V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 605aa MW: 64754.6 Da PI: 6.1807 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.7 | 2.2e-09 | 102 | 126 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tC++G +C++ H+ Pp3c2_24140V3.1.p 102 GQKVCAYYMATRTCSFGVTCRYDHP 126 6789********************8 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG+C+yG++C+F+H++ Pp3c2_24140V3.1.p 158 EPDCAYFMKTGECRYGPQCRFNHPK 182 689********************96 PP | |||||||
3 | zf-CCCH | 22.8 | 1.6e-07 | 222 | 244 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f+ +tG Ck+G+ C+++H++ Pp3c2_24140V3.1.p 222 NCVFYGKTGSCKHGPACRYNHPE 244 79*******************96 PP | |||||||
4 | zf-CCCH | 35.8 | 1.4e-11 | 469 | 495 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f+ +tG+C++G++CkF+H+p Pp3c2_24140V3.1.p 469 PGEPDCTFYIKTGECSFGATCKFHHPP 495 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.2 | 8.9e-11 | 525 | 549 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG Ck+G +Ck+ H+p Pp3c2_24140V3.1.p 525 EAPCAYYMKTGACKFGQTCKYDHPP 549 589********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.015 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.202 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-7 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-6 | 161 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.026 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 222 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 468 | 496 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-5 | 468 | 495 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-8 | 470 | 495 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 472 | 497 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 474 | 494 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 522 | 550 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 522 | 549 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 525 | 549 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 526 | 550 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 527 | 547 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS 60 ADGAAKRLSD GVTDDMTGPN KKPRSNSSGV SGENGLYPQR PGQKVCAYYM ATRTCSFGVT 120 CRYDHPAWLP PGGIPSWKEV TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH 180 PKEKLEPSNT DDQYSAASSA AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY 240 NHPEIVFPAG GRTGQTLQPQ QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS 300 TTPTYTTAPT AYPVATTYST AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG 360 YPPETPTQSY SQAGQQPQCQ EDYTYATQQV SRNGTEYMYS TEQPGQGASD QYATTVYTSE 420 ASGQPSTGDY ACTAAHNSQE YMYAAAQAYH QNVTSVYATP MSLPHPQRPG EPDCTFYIKT 480 GECSFGATCK FHHPPDRIPT GIPKPAKNQG LVKLSLAGLP RRETEAPCAY YMKTGACKFG 540 QTCKYDHPPP QEIIAKAVEQ ARGEIPVSCD VSMPGSNESD SQDATPLPPG TDAPAVTAAC 600 ASST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368798.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X7 | ||||
TrEMBL | A0A2K1L2U7 | 0.0 | A0A2K1L2U7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S86_197V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-41 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_24140V3.1.p |