PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_23590V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 752aa MW: 79081.3 Da PI: 8.5653 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.9e-32 | 372 | 429 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+ +C +kkkvers+ d++v+ei+Y+g+Hnh+k Pp3c2_23590V3.3.p 372 EDGYNWRKYGQKHVKGSEYPRSYYKCTHINCLMKKKVERSR-DGQVTEIIYKGDHNHPK 429 7****************************************.***************85 PP | |||||||
2 | WRKY | 105.8 | 2.3e-33 | 553 | 611 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ Pp3c2_23590V3.3.p 553 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASNDPKAVITTYEGKHNHD 611 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-28 | 365 | 430 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-25 | 369 | 430 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-35 | 371 | 429 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-24 | 372 | 428 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.812 | 372 | 430 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.9E-38 | 538 | 613 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-30 | 545 | 613 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.469 | 548 | 613 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-40 | 553 | 612 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 554 | 611 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0009543 | Cellular Component | chloroplast thylakoid lumen | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0009654 | Cellular Component | photosystem II oxygen evolving complex | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0019898 | Cellular Component | extrinsic component of membrane | ||||
GO:0048046 | Cellular Component | apoplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0008266 | Molecular Function | poly(U) RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MEGEQGGAES GGGGGGNGIL RKPTPSRPQA TMVVGAGEHG IGFKPLEGSM SSMVSGFLAD 60 QEGGTEENRS FSHLLAGAIN SPTPDSVDRS VDGRSTSMES GTNGGTGNHQ AEATDGRGSS 120 PGTAGGSFAE RLAARGAANK VADSGGHPSS GRPPNNNRFK VLQPSRIPIP RQGAYLTIPP 180 GLSPTTLFDS SPVLVSTSQS EPSPTTGTYP MPPFFNGSLT RPVAKVGEVS KERSAEQTFV 240 FKPFLHSVPR PPLPPSLSTF GGTSQHQPVA IPQLHEAPTQ QPQPVTSSST LSASVVPPAP 300 PFLSQAPSST AFPVAVPVTL DVQPLQARVV LQSQSTAIDS QPSQPTASHS SQGSEQQAPP 360 AAVSTIVDRP SEDGYNWRKY GQKHVKGSEY PRSYYKCTHI NCLMKKKVER SRDGQVTEII 420 YKGDHNHPKP QPTRRLALSG AHLISDSSVI PGAGFASMVK NEGGNTERDS SDVSKGRTGS 480 ASGATGTTDP SSPSTSDDEG GAGSKHSTED GDDDEPDSKR RKTDKKSKDP VPPPRMIREP 540 RVVVQTTSDV DILDDGYRWR KYGQKVVKGN PHPRSYYKCT NVGCPVRKHV ERASNDPKAV 600 ITTYEGKHNH DVPAARNVGH DVAMQTAAPV AATARSLQDQ GISFGNSFGQ PPEDSASRWN 660 RGSGDVELGM SVGLGPRVQG AREQGPLAAT AVSLAASIGH PSFDDARAPL QSREPFMSGF 720 GTRPKQEQPE PTTQTNLMNS NSSLHHSMAP V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-38 | 372 | 614 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-38 | 372 | 614 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11170 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889623 | 0.0 | DQ889623.1 Physcomitrella patens WRKY transcription factor 4 (WRKY4) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368160.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X2 | ||||
TrEMBL | A0A2K1L2S7 | 0.0 | A0A2K1L2S7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-78 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_23590V3.3.p |