PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_21080V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 584aa    MW: 62949.2 Da    PI: 6.3075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_21080V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.42.9e-524275721147
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lL++cAeavs+++l+l+++lL +l elasp+g++mqR+aayfte+La r+a+ ++++y+ lp +++   n++e  +a++l+++v P+ k
  Pp3c2_21080V3.5.p 427 LVTLLIACAEAVSTQSLSLVNHLLPKLGELASPQGTAMQRVAAYFTEGLACRVAHLWPHIYQPLPIESSL--NEEELQTAFHLLNHVVPYTK 516
                        6789************************************************************999887..577888899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgv 147
                        f+h+taN  Il+ +eg++rvH+iDfd++qGlQWpaL+q+La R+ gpp ++RiTg 
  Pp3c2_21080V3.5.p 517 FAHFTANDIILQGFEGADRVHVIDFDVKQGLQWPALFQSLAVRECGPPsHIRITGQ 572
                        ********************************************66665*****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.068401583IPR005202Transcription factor GRAS
PfamPF035141.0E-49427572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MLFTGELDEV FRLPAVKTGR SSSPSQPRSG VSSPHGAPGP GSSPGLSGSP SYRGVVGGNN  60
RVLSPGKFML KKGLEPRQII ERRGEQLSNT DTAGSPSFRR AGTTMWPDQT ATTCEAEKSS  120
GQWRSPRCGE DHRSEGEPGG FFHQHQNQSA SNSPLCPGTP IRQHYPRTAP STPLQGISSP  180
DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLDHNVAPV AAPSLSSSPR  240
VLNFESCGSV SPISGPFPSQ YGPSLAKTTT WAPDLATQGY PTSITTHKVE ELSVLPTSQN  300
YVQATTSSLD EWEAATTTST QHNLRAKQWM ASLMEDLRNG DYSTSAQETE ECTTPFTPGV  360
DSCSPHFLAF QRGHSSPCPS DYTGDDNPGG SGLEYLQVES PGGTPRGGGD GDVDDTHNSP  420
AVVGHELVTL LIACAEAVST QSLSLVNHLL PKLGELASPQ GTAMQRVAAY FTEGLACRVA  480
HLWPHIYQPL PIESSLNEEE LQTAFHLLNH VVPYTKFAHF TANDIILQGF EGADRVHVID  540
FDVKQGLQWP ALFQSLAVRE CGPPSHIRIT GQNPLVFPFQ CFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3143457126164Protein SCARECROW
5b3h_A2e-3143457125163Protein SCARECROW
5b3h_D2e-3143457125163Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368133.10.0protein DWARF AND LOW-TILLERING-like
RefseqXP_024368135.10.0protein DWARF AND LOW-TILLERING-like
TrEMBLA0A2K1L2I10.0A0A2K1L2I1_PHYPA; Uncharacterized protein
STRINGPP1S63_198V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-44GRAS family protein