PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_21080V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 812aa    MW: 88734.2 Da    PI: 5.402
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_21080V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.73.9e-1374277901374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lL++cAeavs+++l+l+++lL +l elasp+g++mqR+aayfte+La r+a+ ++++y+ lp +++   n++e  +a++l+++v P+ k
  Pp3c2_21080V3.2.p 427 LVTLLIACAEAVSTQSLSLVNHLLPKLGELASPQGTAMQRVAAYFTEGLACRVAHLWPHIYQPLPIESSL--NEEELQTAFHLLNHVVPYTK 516
                        6789************************************************************999887..577888899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        f+h+taN  Il+ +eg++rvH+iDfd++qGlQWpaL+q+La R+ gpp ++RiTg+g+     ke l etg+rLa+fAee+++pf f++ v 
  Pp3c2_21080V3.2.p 517 FAHFTANDIILQGFEGADRVHVIDFDVKQGLQWPALFQSLAVRECGPPsHIRITGIGE----CKEDLLETGDRLAEFAEEFNIPFTFHA-VI 603
                        ********************************************66665*********....***************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        +rled++l++L+vk++Ea+aVn++ qlhrll +s+++ +    +L+l+ s++Pkvv vveqe +hns++F  rfle+l+yysa+fdslea++
  Pp3c2_21080V3.2.p 604 DRLEDVRLWMLHVKENEAVAVNCISQLHRLLYDSGETIE---GFLNLIGSTKPKVVAVVEQEGSHNSPQFEGRFLESLQYYSAVFDSLEANI 692
                        *******************************99999988...9************************************************* PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        +res++r+ vE+  ++rei+n+++ceg++r erhe+ ++Wr+ ++++GF +vpl+++a++qa  llr+++sdgy++ ee+g+++lgW+++pL
  Pp3c2_21080V3.2.p 693 SRESSARVQVEQL-FAREIRNILSCEGTDRMERHENISRWRSIMSRSGFVKVPLEDSAYTQALILLRMFDSDGYTLAEENGAVTLGWMEQPL 783
                        ***********98.****************************************************************************** PP

               GRAS 368 vsvSaWr 374
                        +++SaW+
  Pp3c2_21080V3.2.p 784 LTASAWK 790
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.888401770IPR005202Transcription factor GRAS
PfamPF035141.3E-134427790IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MLFTGELDEV FRLPAVKTGR SSSPSQPRSG VSSPHGAPGP GSSPGLSGSP SYRGVVGGNN  60
RVLSPGKFML KKGLEPRQII ERRGEQLSNT DTAGSPSFRR AGTTMWPDQT ATTCEAEKSS  120
GQWRSPRCGE DHRSEGEPGG FFHQHQNQSA SNSPLCPGTP IRQHYPRTAP STPLQGISSP  180
DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLDHNVAPV AAPSLSSSPR  240
VLNFESCGSV SPISGPFPSQ YGPSLAKTTT WAPDLATQGY PTSITTHKVE ELSVLPTSQN  300
YVQATTSSLD EWEAATTTST QHNLRAKQWM ASLMEDLRNG DYSTSAQETE ECTTPFTPGV  360
DSCSPHFLAF QRGHSSPCPS DYTGDDNPGG SGLEYLQVES PGGTPRGGGD GDVDDTHNSP  420
AVVGHELVTL LIACAEAVST QSLSLVNHLL PKLGELASPQ GTAMQRVAAY FTEGLACRVA  480
HLWPHIYQPL PIESSLNEEE LQTAFHLLNH VVPYTKFAHF TANDIILQGF EGADRVHVID  540
FDVKQGLQWP ALFQSLAVRE CGPPSHIRIT GIGECKEDLL ETGDRLAEFA EEFNIPFTFH  600
AVIDRLEDVR LWMLHVKENE AVAVNCISQL HRLLYDSGET IEGFLNLIGS TKPKVVAVVE  660
QEGSHNSPQF EGRFLESLQY YSAVFDSLEA NISRESSARV QVEQLFAREI RNILSCEGTD  720
RMERHENISR WRSIMSRSGF VKVPLEDSAY TQALILLRMF DSDGYTLAEE NGAVTLGWME  780
QPLLTASAWK PDKDFVPTGT SLVTNEKQRA V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-8843479126380Protein SCARECROW
5b3h_A6e-8843479125379Protein SCARECROW
5b3h_D6e-8843479125379Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368133.10.0protein DWARF AND LOW-TILLERING-like
RefseqXP_024368135.10.0protein DWARF AND LOW-TILLERING-like
TrEMBLA0A2K1L2I10.0A0A2K1L2I1_PHYPA; Uncharacterized protein
STRINGPP1S63_198V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-124GRAS family protein