PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_21080V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 812aa MW: 88734.2 Da PI: 5.402 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 448.7 | 3.9e-137 | 427 | 790 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lL++cAeavs+++l+l+++lL +l elasp+g++mqR+aayfte+La r+a+ ++++y+ lp +++ n++e +a++l+++v P+ k Pp3c2_21080V3.1.p 427 LVTLLIACAEAVSTQSLSLVNHLLPKLGELASPQGTAMQRVAAYFTEGLACRVAHLWPHIYQPLPIESSL--NEEELQTAFHLLNHVVPYTK 516 6789************************************************************999887..577888899*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+h+taN Il+ +eg++rvH+iDfd++qGlQWpaL+q+La R+ gpp ++RiTg+g+ ke l etg+rLa+fAee+++pf f++ v Pp3c2_21080V3.1.p 517 FAHFTANDIILQGFEGADRVHVIDFDVKQGLQWPALFQSLAVRECGPPsHIRITGIGE----CKEDLLETGDRLAEFAEEFNIPFTFHA-VI 603 ********************************************66665*********....***************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +rled++l++L+vk++Ea+aVn++ qlhrll +s+++ + +L+l+ s++Pkvv vveqe +hns++F rfle+l+yysa+fdslea++ Pp3c2_21080V3.1.p 604 DRLEDVRLWMLHVKENEAVAVNCISQLHRLLYDSGETIE---GFLNLIGSTKPKVVAVVEQEGSHNSPQFEGRFLESLQYYSAVFDSLEANI 692 *******************************99999988...9************************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +res++r+ vE+ ++rei+n+++ceg++r erhe+ ++Wr+ ++++GF +vpl+++a++qa llr+++sdgy++ ee+g+++lgW+++pL Pp3c2_21080V3.1.p 693 SRESSARVQVEQL-FAREIRNILSCEGTDRMERHENISRWRSIMSRSGFVKVPLEDSAYTQALILLRMFDSDGYTLAEENGAVTLGWMEQPL 783 ***********98.****************************************************************************** PP GRAS 368 vsvSaWr 374 +++SaW+ Pp3c2_21080V3.1.p 784 LTASAWK 790 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.888 | 401 | 770 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-134 | 427 | 790 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MLFTGELDEV FRLPAVKTGR SSSPSQPRSG VSSPHGAPGP GSSPGLSGSP SYRGVVGGNN 60 RVLSPGKFML KKGLEPRQII ERRGEQLSNT DTAGSPSFRR AGTTMWPDQT ATTCEAEKSS 120 GQWRSPRCGE DHRSEGEPGG FFHQHQNQSA SNSPLCPGTP IRQHYPRTAP STPLQGISSP 180 DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLDHNVAPV AAPSLSSSPR 240 VLNFESCGSV SPISGPFPSQ YGPSLAKTTT WAPDLATQGY PTSITTHKVE ELSVLPTSQN 300 YVQATTSSLD EWEAATTTST QHNLRAKQWM ASLMEDLRNG DYSTSAQETE ECTTPFTPGV 360 DSCSPHFLAF QRGHSSPCPS DYTGDDNPGG SGLEYLQVES PGGTPRGGGD GDVDDTHNSP 420 AVVGHELVTL LIACAEAVST QSLSLVNHLL PKLGELASPQ GTAMQRVAAY FTEGLACRVA 480 HLWPHIYQPL PIESSLNEEE LQTAFHLLNH VVPYTKFAHF TANDIILQGF EGADRVHVID 540 FDVKQGLQWP ALFQSLAVRE CGPPSHIRIT GIGECKEDLL ETGDRLAEFA EEFNIPFTFH 600 AVIDRLEDVR LWMLHVKENE AVAVNCISQL HRLLYDSGET IEGFLNLIGS TKPKVVAVVE 660 QEGSHNSPQF EGRFLESLQY YSAVFDSLEA NISRESSARV QVEQLFAREI RNILSCEGTD 720 RMERHENISR WRSIMSRSGF VKVPLEDSAY TQALILLRMF DSDGYTLAEE NGAVTLGWME 780 QPLLTASAWK PDKDFVPTGT SLVTNEKQRA V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-88 | 434 | 791 | 26 | 380 | Protein SCARECROW |
5b3h_A | 6e-88 | 434 | 791 | 25 | 379 | Protein SCARECROW |
5b3h_D | 6e-88 | 434 | 791 | 25 | 379 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368133.1 | 0.0 | protein DWARF AND LOW-TILLERING-like | ||||
Refseq | XP_024368135.1 | 0.0 | protein DWARF AND LOW-TILLERING-like | ||||
TrEMBL | A0A2K1L2I1 | 0.0 | A0A2K1L2I1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S63_198V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5507 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-124 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_21080V3.1.p |