PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_20240V3.4.p

Common Name

PHYPADRAFT_168056

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 618aa MW: 63868 Da PI: 10.0547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_20240V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c2_20240V3.4.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.4	0.00047	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c2_20240V3.4.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.1E-5	85	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.54E-7	85	108	No hit	No description
PROSITE profile	PS50157	10.949	86	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	127	157	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-4	150	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.54E-7	157	182	No hit	No description
SMART	SM00355	140	162	182	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MTLSNLTSAS AGEASVSSGN HADGTNPGMP PTPSTPATPT TTTVTVSSGQ PLGVPVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGGQP DGLTGPGSSS 240 MSVVGAPSSP PHGNNVGPVS GDPLASVVPL ASRSGGLPPS MAGLGGLSEL PRWCGAPGGS 300 GSVPRAGTGL SLWLGPDPGP PGNQQQMHQL LSGSDGNSSF LLQAQKGMQG GADLPGILNP 360 LDYDVPQAPR PSSGQLPLTP SGSLLAHLFA SGNGLQGFQG SSPSQSGATA GMGISGFSDF 420 TGGASRMERG LTAAGMSPTS SAGLTSNSSS GNTNSGGNLS SVSPLFKAQQ QQQQHTASAQ 480 MSATALLQKA AQMGATASNS SLLRGFGLGG ADSNSLGIWQ GHRQEQQQQQ SQQSHPQPQQ 540 QQSQSQPQPQ QQQGRTGGAS GMTAVGGGMG RTLSQRDLAS ITSLGPGVDL GAFFNQGENL 600 RSVNASGRSP GKSWDAT*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MTLSNLTSAS AGEASVSSGN HADGTNPGMP PTPSTPATPT TTTVTVSSGQ PLGVPVKRKR  60
NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK  120
EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGGQP DGLTGPGSSS  240
MSVVGAPSSP PHGNNVGPVS GDPLASVVPL ASRSGGLPPS MAGLGGLSEL PRWCGAPGGS  300
GSVPRAGTGL SLWLGPDPGP PGNQQQMHQL LSGSDGNSSF LLQAQKGMQG GADLPGILNP  360
LDYDVPQAPR PSSGQLPLTP SGSLLAHLFA SGNGLQGFQG SSPSQSGATA GMGISGFSDF  420
TGGASRMERG LTAAGMSPTS SAGLTSNSSS GNTNSGGNLS SVSPLFKAQQ QQQQHTASAQ  480
MSATALLQKA AQMGATASNS SLLRGFGLGG ADSNSLGIWQ GHRQEQQQQQ SQQSHPQPQQ  540
QQSQSQPQPQ QQQGRTGGAS GMTAVGGGMG RTLSQRDLAS ITSLGPGVDL GAFFNQGENL  600
RSVNASGRSP GKSWDAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	158	222	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-35	158	222	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2328	0.0	protonema

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024365607.1	0.0	protein indeterminate-domain 7-like isoform X2
TrEMBL	A0A2K1L2D8	0.0	A0A2K1L2D8_PHYPA; Uncharacterized protein
STRING	PP1S165_3V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_20240V3.4.p
Entrez Gene	5936824

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]