PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_1870V3.2.p | ||||||||
Common Name | PHYPADRAFT_170406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31823.9 Da PI: 9.2129 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38 | 4.1e-12 | 79 | 120 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 y+GVr+++ ++v eIr + k+++lg+++taeeAa+a + Pp3c2_1870V3.2.p 79 YRGVRYREGLSKYVTEIRPtR-----SsKKIWLGTYDTAEEAARAFD 120 9***************99933.....35****************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-17 | 78 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-8 | 78 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-9 | 78 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15 | 78 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-5 | 79 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-12 | 79 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.38E-14 | 79 | 137 | No hit | No description |
PRINTS | PR00367 | 3.6E-5 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVGASWNKCR RTSSLRSSPR TAGRKTKNEL PASASSSSSS SSSSSHSPMR RRDALRNMVL 60 NVVRPSRTAA AAADHPVSYR GVRYREGLSK YVTEIRPTRS SKKIWLGTYD TAEEAARAFD 120 IGNLCCKKNL PLNFADSPRL LKRISSKLSE EECRSAIAKL AKEVARVVVM KSASEGETTN 180 QEEVSRGAAI KARRSVESTT KDSLPKTEPQ IQRLEACGTC SSITYTELPV ERLEPVFIFE 240 EEMVTPMSPF DMSGMSLPDN LQEISFCDFD SPSLSSENYG DVYFYRT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2708 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402723.1 | 0.0 | dehydration-responsive element-binding protein 1G-like | ||||
TrEMBL | A0A2K1KZS2 | 0.0 | A0A2K1KZS2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S243_70V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_1870V3.2.p |
Entrez Gene | 5941901 |
Publications ? help Back to Top | |||
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