PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_1870V3.1.p

Common Name

PHYPADRAFT_170406

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 288aa MW: 31823.9 Da PI: 9.2129

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_1870V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.1e-12	79	120	3	47
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 y+GVr+++ ++v eIr + k+++lg+++taeeAa+a + Pp3c2_1870V3.1.p 79 YRGVRYREGLSKYVTEIRPtR-----SsKKIWLGTYDTAEEAARAFD 120 9*************99933.....35**************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.5E-17	78	137	IPR001471	AP2/ERF domain
Pfam	PF00847	7.9E-8	78	118	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-9	78	137	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15	78	138	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-5	79	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-12	79	134	IPR016177	DNA-binding domain
CDD	cd00018	9.38E-14	79	137	No hit	No description
PRINTS	PR00367	3.6E-5	102	118	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVGASWNKCR RTSSLRSSPR TAGRKTKNEL PASASSSSSS SSSSSHSPMR RRDALRNMVL 60 NVVRPSRTAA AAADHPVSYR GVRYREGLSK YVTEIRPTRS SKKIWLGTYD TAEEAARAFD 120 IGNLCCKKNL PLNFADSPRL LKRISSKLSE EECRSAIAKL AKEVARVVVM KSASEGETTN 180 QEEVSRGAAI KARRSVESTT KDSLPKTEPQ IQRLEACGTC SSITYTELPV ERLEPVFIFE 240 EEMVTPMSPF DMSGMSLPDN LQEISFCDFD SPSLSSENYG DVYFYRT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2708	0.0	gametophore\| protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402723.1	0.0	dehydration-responsive element-binding protein 1G-like
TrEMBL	A0A2K1KZS2	0.0	A0A2K1KZS2_PHYPA; Uncharacterized protein
STRING	PP1S243_70V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	3e-15	ERF family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_1870V3.1.p
Entrez Gene	5941901

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]