PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_17030V3.3.p

Common Name

PHYPADRAFT_172534

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 302aa MW: 34031.5 Da PI: 9.123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_17030V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.2	2.7e-13	192	217	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelCr + +tG+C+y ++C+FaHg Pp3c2_17030V3.3.p 192 YKTELCRSWEETGHCRYAAKCQFAHG 217 9************************8 PP
2	zf-CCCH	33.1	9.6e-11	240	261	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCr + +tG C+yG rC+F+H Pp3c2_17030V3.3.p 240 KLCRSYTETGLCSYGKRCRFIH 261 79******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.4E-18	187	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.24E-9	190	224	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.394	191	219	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.6E-8	191	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-9	192	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-8	226	262	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	236	264	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-5	236	263	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-7	237	262	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-8	240	261	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0061158	Biological Process	3'-UTR-mediated mRNA destabilization
GO:0005829	Cellular Component	cytosol
GO:0003730	Molecular Function	mRNA 3'-UTR binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSFPYMQDGS GVSPPGEKLY SAYSQSILRK GRGMSEKNFE FIFSDTSSMG MKFSVGVPYS 60 STTTEEDFQE LEQESSVDSS STRCILQRKP RKGRKMLLHT PGNVCGYDPE KFGICNRSVS 120 FLNPVQALRN LQHERMHSPG INVHFRCTHR LHAPSIIRSK PAINHAGSEL PLCSPSAPSD 180 EIEHPQIKEG LYKTELCRSW EETGHCRYAA KCQFAHGNDD LRPVPRHPKY KTEEKKDQSK 240 LCRSYTETGL CSYGKRCRFI HTSGTNTQVF LESRNLEKKG SRRLSIFQQL SGAGEMPPRQ 300 A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	2e-20	192	263	4	68	Butyrate response factor 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024364440.1	0.0	zinc finger CCCH domain-containing protein 39-like
TrEMBL	A0A2K1L1V7	0.0	A0A2K1L1V7_PHYPA; Uncharacterized protein
STRING	PP1S358_43V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2058	16	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	7e-22	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_17030V3.3.p
Entrez Gene	5946488

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]