PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_17030V3.2.p | ||||||||
Common Name | PHYPADRAFT_172534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 33187.6 Da PI: 8.9942 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.3 | 2.6e-13 | 192 | 217 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelCr + +tG+C+y ++C+FaHg Pp3c2_17030V3.2.p 192 YKTELCRSWEETGHCRYAAKCQFAHG 217 9************************8 PP | |||||||
2 | zf-CCCH | 40 | 6.6e-13 | 230 | 254 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 yktelCr + +tG C+yG rC+F+H Pp3c2_17030V3.2.p 230 YKTELCRSYTETGLCSYGKRCRFIH 254 9************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-18 | 187 | 224 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-9 | 190 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-8 | 191 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 191 | 219 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 192 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 225 | 255 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-9 | 226 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 229 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-8 | 229 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-10 | 230 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSFPYMQDGS GVSPPGEKLY SAYSQSILRK GRGMSEKNFE FIFSDTSSMG MKFSVGVPYS 60 STTTEEDFQE LEQESSVDSS STRCILQRKP RKGRKMLLHT PGNVCGYDPE KFGICNRSVS 120 FLNPVQALRN LQHERMHSPG INVHFRCTHR LHAPSIIRSK PAINHAGSEL PLCSPSAPSD 180 EIEHPQIKEG LYKTELCRSW EETGHCRYAA KCQFAHGNDD LRPVPRHPKY KTELCRSYTE 240 TGLCSYGKRC RFIHTSGTNT QVFLESRNLE KKGSRRLSIF QQLSGAGEMP PRQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-23 | 192 | 256 | 4 | 68 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024364440.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A2K1L1V7 | 0.0 | A0A2K1L1V7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S358_43V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-24 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_17030V3.2.p |
Entrez Gene | 5946488 |
Publications ? help Back to Top | |||
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