PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_16080V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bZIP | ||||||||
Protein Properties | Length: 344aa MW: 38061.8 Da PI: 8.2494 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 45 | 75 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k+ rr+++NReAAr+sR+RKka++++Le Pp3c2_16080V3.5.p 45 SKALRRLAQNREAARKSRLRKKAYVQQLESS 75 7999************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.8E-5 | 42 | 109 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.6E-7 | 43 | 88 | No hit | No description |
PROSITE profile | PS50217 | 8.898 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.03E-7 | 46 | 87 | No hit | No description |
Pfam | PF00170 | 5.2E-7 | 46 | 79 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.45E-21 | 46 | 99 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.3E-31 | 141 | 216 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGDNSPRTDT STDIEGDAKF EDGHHTITGG SNTSDHEAGN KNGDSKALRR LAQNREAARK 60 SRLRKKAYVQ QLESSRIKLN QLELELQRAR QQQGLYLGPS SYSGDHNAHS GGGSGGTNAN 120 LLGAAAFDME YGRWVEEQHR QMSELRAALQ AQVADTDLRV LVDRGMIHYD DIFRLKAVAA 180 KVDVFHLFSG VWKTPVERCF MWIGGFRPSE LLKTLTPQIE PLTKQQLLNI CNLQQSSLQA 240 EEALSQGLEA LQLSLSDTLS GGSLGSSSNV SNYMDQMAGA MTKLGTYEAF VHRADNLRQQ 300 TLQQMHRILT TRQAARGLLA MGDYFARLRA LSSLWLARPR ELD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397994.1 | 0.0 | transcription factor HBP-1b(c38)-like isoform X3 | ||||
Refseq | XP_024398000.1 | 0.0 | transcription factor HBP-1b(c38)-like isoform X3 | ||||
Swissprot | Q41558 | 1e-141 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A2K1L1Q7 | 0.0 | A0A2K1L1Q7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S30_324V6.4 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 4e-98 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_16080V3.5.p |