PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_16080V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 344aa    MW: 38061.8 Da    PI: 8.2494
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_16080V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-104575434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                       +k+ rr+++NReAAr+sR+RKka++++Le  
  Pp3c2_16080V3.2.p 45 SKALRRLAQNREAARKSRLRKKAYVQQLESS 75
                       7999************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-542109IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-74388No hitNo description
PROSITE profilePS502178.8984488IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-74687No hitNo description
PfamPF001705.2E-74679IPR004827Basic-leucine zipper domain
CDDcd147083.45E-214699No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141441.3E-31141216IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGDNSPRTDT STDIEGDAKF EDGHHTITGG SNTSDHEAGN KNGDSKALRR LAQNREAARK  60
SRLRKKAYVQ QLESSRIKLN QLELELQRAR QQQGLYLGPS SYSGDHNAHS GGGSGGTNAN  120
LLGAAAFDME YGRWVEEQHR QMSELRAALQ AQVADTDLRV LVDRGMIHYD DIFRLKAVAA  180
KVDVFHLFSG VWKTPVERCF MWIGGFRPSE LLKTLTPQIE PLTKQQLLNI CNLQQSSLQA  240
EEALSQGLEA LQLSLSDTLS GGSLGSSSNV SNYMDQMAGA MTKLGTYEAF VHRADNLRQQ  300
TLQQMHRILT TRQAARGLLA MGDYFARLRA LSSLWLARPR ELD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397994.10.0transcription factor HBP-1b(c38)-like isoform X3
RefseqXP_024398000.10.0transcription factor HBP-1b(c38)-like isoform X3
SwissprotQ415581e-141HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2K1L1Q70.0A0A2K1L1Q7_PHYPA; Uncharacterized protein
STRINGPP1S30_324V6.40.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.24e-98TGACG motif-binding factor 6