PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c2_15730V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27598.9 Da PI: 6.6662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 29 | 67 | 2 | 44 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 +y+GVr+++ +g+W+AeI+dps+ r r +lg+++tae+Aa+ Pp3c2_15730V3.3.p 29 KYRGVRQRP-WGKWAAEIQDPSK---RVRLWLGTYDTAEQAAQ 67 8********.**********975...6**************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-10 | 29 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.39E-25 | 29 | 81 | No hit | No description |
PROSITE profile | PS51032 | 17.385 | 29 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-26 | 29 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-21 | 29 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-16 | 29 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MATAKFTVLE KSQPKSASLV STNEGKPHKY RGVRQRPWGK WAAEIQDPSK RVRLWLGTYD 60 TAEQAAQEIH GPQAHTNFST SKKVEHITTT TSRSDVMSKK TMKKEASPKG SRPVKEPVTL 120 TPEVEGTSYS SKPMCPVQVK RITDGDEKTC VSRGKDEDMK MLGDAYDTIE VDLMSDDTLF 180 DNLSDDCGFF MCSSSSMDGS HGLPWSSLTV CEPSSNNFDA AVNAVTKSGE NGIKQRFQQN 240 QTLDLLTNCD * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024363732.1 | 0.0 | ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A9RQ18 | 6e-81 | A9RQ18_PHYPA; Predicted protein | ||||
STRING | PP1S7_481V6.1 | 1e-129 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-22 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c2_15730V3.3.p |