PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c2_13400V3.3.p | ||||||||
Common Name | PHYPADRAFT_70873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 338aa MW: 38439 Da PI: 7.6661 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34 | 7.8e-11 | 87 | 172 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + v + +++++e+ ++ rg+ + ++We+ ++ +e+ ++ kqC++k+++l+kr+k ++ ++ + ++ ++++fd+++ Pp3c2_13400V3.3.p 87 EWSARAVALFLDLYEEKYFEMDRGSFRFKDWEHLVERFnMEGEGGKTVKQCRDKLDSLKKRHKLERGRKAST-GAETCSWVWFDKMD 172 5*******************************966665599999********************99999985.666679*******7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-14 | 85 | 173 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MIEVRGWLGG SFHGLFLGSS GSQLSYKTIG ALDWVAMEDD RSKSPLPVSV PLPPPPPPMS 60 MLSTASLQPA ETERKPTVRN GEEKREEWSA RAVALFLDLY EEKYFEMDRG SFRFKDWEHL 120 VERFNMEGEG GKTVKQCRDK LDSLKKRHKL ERGRKASTGA ETCSWVWFDK MDGMFGDHVK 180 HQGVLFGPEL IDMRFTADKF RIAAGENIVT EEDHNRRLVG SWKEAKKVLQ DLPLSAEERG 240 KARTVLLEKK EEERLEYFVG DFEEVSHCLK LLVERASVHP PGTPGVIQMD FAVATDIQRR 300 LEEIIADVIS LKRRATPDLQ FFMPTAKNSK TKRKLSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399313.1 | 0.0 | uncharacterized protein LOC112293746 | ||||
TrEMBL | A0A2K1L1C2 | 0.0 | A0A2K1L1C2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S30_55V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10030.1 | 5e-22 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c2_13400V3.3.p |
Entrez Gene | 5921260 |
Publications ? help Back to Top | |||
---|---|---|---|
|