PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_11580V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 415aa    MW: 47293.9 Da    PI: 8.4689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_11580V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-12314354348
                AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                        y+GVr+  ++g+Wv+eIr+    g  + +++lg+f+t++eAa a +a
  Pp3c2_11580V3.5.p 314 YRGVRR--RNGKWVSEIRV----GqTNEKVWLGSFDTEKEAALAFDA 354
                        9***85..47*********....5446**********9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.1E-13313376IPR001471AP2/ERF domain
PROSITE profilePS5103215.106313370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-19313372IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-11313371IPR016177DNA-binding domain
CDDcd000182.59E-16314372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MIEKKPSRWG LLSRQASVLG RFKNKLRLKK LEWKRFYEQF WGPAPPNPAS QDDFNEWPDS  60
CYSTEGSHTS KNNSLHLDSS SSEDYWALFR QEQIENPPPF QLGDRSFVPE ICPVVPSTFQ  120
QDSGMYAQSE QFHLTQGRGD FVTTALPGSP VVGTTEASLN GQQQLPTPRL DHTNSFDSNP  180
LSVDDYAETE NDAISEWLQL DLPKSEQQGS SHLNTDIMRS MNTRYSGEAS TMPLTPEARL  240
QWFKQFFELG AEEALTRPHQ ASTELGWRVM VRIVCACRKL SRLIRRRRVD EIPPGRAIVR  300
KRNRGFGENR SQLYRGVRRR NGKWVSEIRV GQTNEKVWLG SFDTEKEAAL AFDAGKYHCS  360
SQRRCSYNFP ESPLLLGPPV NIHELSPADR KRTIQKLAED HVKACTSDQI RSTN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368685.10.0uncharacterized protein LOC112278963 isoform X1
RefseqXP_024368686.10.0uncharacterized protein LOC112278963 isoform X1
TrEMBLA0A2K1L1560.0A0A2K1L156_PHYPA; Uncharacterized protein
STRINGPP1S183_112V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.15e-16ERF family protein