PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_7510V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 38516.2 Da PI: 7.7711 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9.2e-52 | 18 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL +k+e+ ++++ vi+e+d+yk++PwdLp k+ +e ewyfFs+rd+ky++g r+nra++sg+Wkatg+d++v Pp3c27_7510V3.1.p 18 LPPGFRFHPTDEELVLHYLWRKTESATFSI-PVITELDLYKYDPWDLPGKAILGEGEWYFFSPRDRKYPNGARPNRAAASGFWKATGTDRPV 108 79***************************9.89***************76667889************************************ PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +++g+kk Lvfykgrapkg+kt+Wvmheyrl Pp3c27_7510V3.1.p 109 HTSrgTLQKIGVKKALVFYKGRAPKGVKTTWVMHEYRL 146 *99555567***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-62 | 11 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 18 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-27 | 19 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MLNMASSSGV PVIPQIELPP GFRFHPTDEE LVLHYLWRKT ESATFSIPVI TELDLYKYDP 60 WDLPGKAILG EGEWYFFSPR DRKYPNGARP NRAAASGFWK ATGTDRPVHT SRGTLQKIGV 120 KKALVFYKGR APKGVKTTWV MHEYRLADGI SPSSNTTRKP GSLRLDDWVL CRIFKKIPSV 180 QRGSSIDLNN SDVNEVLASL PEINNRSLVL PDLGPSSSGI MDLDPLWDEC DPDEARYKDQ 240 QHVDKGGARD PDPDRASIVA LHGNTIRRVQ SRSNEYLETL SNGSAFHHTS TPSALDHADF 300 SRERSQPTAT VYQSTIVSTF QTYPGVQRHT QRDSSGYLDA MLPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-73 | 13 | 182 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-73 | 13 | 182 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-73 | 13 | 182 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-73 | 13 | 182 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-73 | 13 | 182 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-73 | 13 | 182 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-73 | 13 | 182 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367540.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367541.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367542.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367544.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367545.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367546.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367547.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367548.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367549.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367550.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367551.1 | 0.0 | NAC transcription factor 25-like | ||||
Refseq | XP_024367552.1 | 0.0 | NAC transcription factor 25-like | ||||
Swissprot | Q8H4S4 | 2e-78 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2K1IB21 | 0.0 | A0A2K1IB21_PHYPA; Uncharacterized protein | ||||
STRING | PP1S164_33V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-79 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_7510V3.1.p |
Publications ? help Back to Top | |||
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