PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_7430V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 413aa    MW: 46234.8 Da    PI: 8.6906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_7430V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.6e-54161431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL++k+++  +++  vi+evd+yk++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  Pp3c27_7430V3.1.p  16 LPPGFRFHPTDEELVLHYLRRKANSGVFQI-PVIAEVDLYKFDPWDLPNKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPI 106
                        79***************************9.89***************8888899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl
  Pp3c27_7430V3.1.p 107 HMSkGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 143
                        98757778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-648172IPR003441NAC domain
PROSITE profilePS5100561.69116172IPR003441NAC domain
PfamPF023651.5E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVIMKPTRGS IDQLRLPPGF RFHPTDEELV LHYLRRKANS GVFQIPVIAE VDLYKFDPWD  60
LPNKALFGER EWYFFSPRDR KYPNGARPNR AAASGYWKAT GTDKPIHMSK GHSKVGVKKA  120
LVFYRGKAPK GEKTNWIMHE YRLAEGVSTS THHPRRNSSR LDDWVLCRIY EKTSHAQRAS  180
KEYENSSVEE VLASLPDSVD DLRFVLPRLN SLNGNLELAV QQEALGDNRL TEKASENGCL  240
SANFDSIQKG TMSNNPGSLL TLANDWKLQQ SMTINHDTLE SSRLMGHLAS TSSVHRPALS  300
TRPMANSFMA QFRHPPRSYH LCPSSGQEKI LPAGHSTFDE EVQSTLRSSA MGYTNARSSN  360
DQGLETMFSA VSYEDRSNPS YGGPAVTEHS VYPAIPTPPS MDFNFSYAGD FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-791117812171NO APICAL MERISTEM PROTEIN
1ut4_B6e-791117812171NO APICAL MERISTEM PROTEIN
1ut7_A6e-791117812171NO APICAL MERISTEM PROTEIN
1ut7_B6e-791117812171NO APICAL MERISTEM PROTEIN
3swm_A6e-791117815174NAC domain-containing protein 19
3swm_B6e-791117815174NAC domain-containing protein 19
3swm_C6e-791117815174NAC domain-containing protein 19
3swm_D6e-791117815174NAC domain-containing protein 19
3swp_A6e-791117815174NAC domain-containing protein 19
3swp_B6e-791117815174NAC domain-containing protein 19
3swp_C6e-791117815174NAC domain-containing protein 19
3swp_D6e-791117815174NAC domain-containing protein 19
4dul_A6e-791117812171NAC domain-containing protein 19
4dul_B6e-791117812171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26550.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367538.10.0NAC transcription factor 32-like isoform X1
SwissprotQ93VY33e-84NAC72_ARATH; NAC domain-containing protein 72
TrEMBLA0A2K1IB160.0A0A2K1IB16_PHYPA; Uncharacterized protein
STRINGPP1S164_25V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-86NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]