PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_60V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ARF | ||||||||
Protein Properties | Length: 753aa MW: 83436.3 Da PI: 6.5529 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 84.1 | 1.3e-26 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d++g++W++++iyr++++r++lt+GW+ Fv+a++L +gD+v+F + + Pp3c27_60V3.5.p 134 FCKTLTASDTSTHGGFSVPRRSAEDClplldyNMNPPCQ-ELVAKDLHGQEWKFRHIYRGYPRRHLLTTGWSTFVSAKKLVAGDTVIFL--RGE 224 99******************************8888886.9************************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+v+v+r+ Pp3c27_60V3.5.p 225 NGQLRVGVRRA 235 9999*****97 PP | |||||||
2 | Auxin_resp | 107.3 | 1.8e-35 | 260 | 342 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha ++++ F+v+YnPr+s+seFv++++k++ka++ +++vG+Rf+m+fe+e+ss rr++Gt++ v+d+dp+rWpnS Wrs+k Pp3c27_60V3.5.p 260 ASHASREGMRFSVIYNPRTSPSEFVIPYHKFLKAMDYNLAVGSRFRMKFESEESSGRRYAGTITEVNDADPLRWPNSLWRSMK 342 6799999*************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-39 | 126 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-42 | 128 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-24 | 132 | 234 | No hit | No description |
PROSITE profile | PS50863 | 13.733 | 134 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-23 | 134 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-31 | 260 | 342 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.6E-9 | 646 | 734 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.028 | 648 | 731 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.11E-8 | 651 | 726 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MYGYGGGMMR GPMMNQGLSK IDDLDYELWH ACAGPLTSLP PVDSLVIYWP QGHIEQVIAC 60 TPDSAGAADV REASSHFKLP SHLLCRIGQL ELQADPNTDE VFAQMDLLPQ DEGSVTKEMK 120 EAPSAIKQSS VKMFCKTLTA SDTSTHGGFS VPRRSAEDCL PLLDYNMNPP CQELVAKDLH 180 GQEWKFRHIY RGYPRRHLLT TGWSTFVSAK KLVAGDTVIF LRGENGQLRV GVRRASKQQP 240 QAHSTYFSST NLHLGVLAAA SHASREGMRF SVIYNPRTSP SEFVIPYHKF LKAMDYNLAV 300 GSRFRMKFES EESSGRRYAG TITEVNDADP LRWPNSLWRS MKVEWDEVIS ASDRHERVSP 360 WEIEPFVPIS TLPPPLGGAR QKRRSPTLVK DPLLGTSQSV LDSYQSNKLF KVLQGFDSRN 420 EFSMEDEEDE DVVCSRNTSW NVKPEPPPKT VPQAMPAQQS WFPRADMPSF GVPVAPHQPL 480 ISPRVPSENM NLQLSVNPAS SEQAPGNDHS SASWSDFSGG CLNFNWLYNA STPRPVFERS 540 NLPTTSLNNE SASKMLPPQV IPPFEARDKV ELVKLRTTPA LVQPCKLFGF DLADKKVPSS 600 VTLAPSHGEV SEVTVELLRT DLTSGGHLGN KLTAESCQAT QAHVTPMRSG IKVYQPGKVG 660 RTIDLKKCES YTGLRRVLAN LFNLQGQLDD VTKGWQLVYT DHENDVLLVG DDPWEEFCGC 720 VRSLKILSPQ DVAGQSVGKF PTSSCENDDG RQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 22 | 366 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-119 | 22 | 366 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-119 | 22 | 366 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5800 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367460.1 | 0.0 | auxin response factor 25-like | ||||
Refseq | XP_024367461.1 | 0.0 | auxin response factor 25-like | ||||
Refseq | XP_024367462.1 | 0.0 | auxin response factor 25-like | ||||
Refseq | XP_024367463.1 | 0.0 | auxin response factor 25-like | ||||
TrEMBL | A0A2K1IA28 | 0.0 | A0A2K1IA28_PHYPA; Auxin response factor | ||||
STRING | PP1S280_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-130 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_60V3.5.p |