PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_6030V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 28418.6 Da PI: 4.8268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+Wv+eIr+p +kr r++lg+f tae+Aaka++aa +l+g Pp3c27_6030V3.2.p 51 LYKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAVVCLRG 100 59****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 51 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 51 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 52 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.96E-32 | 52 | 109 | No hit | No description |
Pfam | PF00847 | 2.0E-11 | 52 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MVEKARSESL NAKRGGNLLA PLKTSATILK KSTPSSLNST KSSSCNSSSK LYKGVRMRTW 60 GKWVSEIREP NKRSRIWLGS FPTAEMAAKA YDAAVVCLRG PSATLNFPDC PPSNLCRCTA 120 PRDVQAAAAA AAAACAPLTE STESTPQSPG TASSEVETGS HHDSSSDGAT KDSFQCSTPT 180 TSQPNSMAMD MNMENWLNAE FGGLQPSDEA SGFRELMMQL DLTNFATLDF ATPPSVNDEQ 240 NFSMTSPSSD DEGCVLFDHE LWCFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 52 | 108 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4257 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367307.1 | 0.0 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A2K1IAW2 | 0.0 | A0A2K1IAW2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S276_3V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 3e-29 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_6030V3.2.p |