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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pp3c27_5490V3.6.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | ERF | ||||||||
| Protein Properties | Length: 393aa MW: 42354.9 Da PI: 5.9691 | ||||||||
| Description | ERF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 53.7 | 5.1e-17 | 116 | 166 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr ++ +g Wv eIr p++ + r++lg+f tae+Aa+a++ a+++l+g+
Pp3c27_5490V3.6.p 116 IYRGVRKRP-WGIWVTEIRRPKN---KSRIWLGSFATAEMAARAYDCAALALRGN 166
69*******.**********954...5*************************995 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00018 | 3.71E-29 | 115 | 173 | No hit | No description |
| Pfam | PF00847 | 5.0E-12 | 115 | 165 | IPR001471 | AP2/ERF domain |
| Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 116 | 174 | IPR001471 | AP2/ERF domain |
| PROSITE profile | PS51032 | 22.853 | 116 | 173 | IPR001471 | AP2/ERF domain |
| SMART | SM00380 | 9.4E-32 | 116 | 179 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 1.77E-19 | 116 | 173 | IPR016177 | DNA-binding domain |
| PRINTS | PR00367 | 2.5E-9 | 117 | 128 | IPR001471 | AP2/ERF domain |
| PRINTS | PR00367 | 2.5E-9 | 139 | 155 | IPR001471 | AP2/ERF domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 393 aa Download sequence Send to blast |
MGASACWIAS IPAHDWAGPL SMLNDIELLA HRVLPPPTDY SYYITAVSAP CNMSDAGGNP 60 HGVGKERSPD GNAGVDSGAD EQDDSNERVE SPTLSKREER EVRKKAKLEG DTRHPIYRGV 120 RKRPWGIWVT EIRRPKNKSR IWLGSFATAE MAARAYDCAA LALRGNGALL NFPKMAASLP 180 RPADLTDKSI QAAATIAANN FAQLPSEMDV YGAMPSQSAL SSSPKGDEDH QQHGSQQKLR 240 QTSKSTTFTL GRVGGSSSQR LISNSDGSKS YQPSSSTKQG EEANLHKIIV STSNPQSRSS 300 EIAGTQSRYS SMCTSDTESM ENLKHHATGG ENNPPSSSGV QQLLFVDSED MFTIGFTNLC 360 DAMCIPPPAP EHATETDGEE GSTIWEPHLW SY* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1gcc_A | 2e-17 | 117 | 173 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 4e-17 | 114 | 173 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024367377.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367378.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367379.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367380.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367381.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367382.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367383.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367385.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367386.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367387.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367388.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367389.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367390.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367391.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367392.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367393.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367394.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367396.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367397.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| Refseq | XP_024367398.1 | 0.0 | uncharacterized protein LOC112278320 isoform X1 | ||||
| TrEMBL | A9TNY0 | 0.0 | A9TNY0_PHYPA; Predicted protein | ||||
| STRING | PP1S276_50V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP6 | 16 | 1718 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G44940.1 | 5e-19 | ERF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c27_5490V3.6.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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