PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_5490V3.4.p
Common NamePHYPADRAFT_196844
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 341aa    MW: 36771.5 Da    PI: 6.2477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_5490V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1764114256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +g Wv eIr p++   + r++lg+f tae+Aa+a++ a+++l+g+
  Pp3c27_5490V3.4.p  64 IYRGVRKRP-WGIWVTEIRRPKN---KSRIWLGSFATAEMAARAYDCAALALRGN 114
                        69*******.**********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1263113IPR001471AP2/ERF domain
CDDcd000182.65E-2963121No hitNo description
SMARTSM003809.4E-3264127IPR001471AP2/ERF domain
PROSITE profilePS5103222.85364121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2964122IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1964121IPR016177DNA-binding domain
PRINTSPR003672.0E-96576IPR001471AP2/ERF domain
PRINTSPR003672.0E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSDAGGNPHG VGKERSPDGN AGVDSGADEQ DDSNERVESP TLSKREEREV RKKAKLEGDT  60
RHPIYRGVRK RPWGIWVTEI RRPKNKSRIW LGSFATAEMA ARAYDCAALA LRGNGALLNF  120
PKMAASLPRP ADLTDKSIQA AATIAANNFA QLPSEMDVYG AMPSQSALSS SPKGDEDHQQ  180
HGSQQKLRQT SKSTTFTLGR VGGSSSQRLI SNSDGSKSYQ PSSSTKQGEE ANLHKIIVST  240
SNPQSRSSEI AGTQSRYSSM CTSDTESMEN LKHHATGGEN NPPSSSGVQQ LLFVDSEDMF  300
TIGFTNLCDA MCIPPPAPEH ATETDGEEGS TIWEPHLWSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1765121360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-17621211272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367399.10.0ethylene-responsive transcription factor ERF034-like isoform X2
RefseqXP_024367400.10.0ethylene-responsive transcription factor ERF034-like isoform X2
RefseqXP_024367401.10.0ethylene-responsive transcription factor ERF034-like isoform X2
TrEMBLA9TNY00.0A9TNY0_PHYPA; Predicted protein
STRINGPP1S276_50V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-19ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]