PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_5350V3.3.p | ||||||||
Common Name | PHYPADRAFT_95231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 499aa MW: 55916.1 Da PI: 9.9256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.6 | 1.2e-11 | 337 | 385 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y GVrw+ ++W +eIr g +++++lg++ t+eeAa a++a +++ Pp3c27_5350V3.3.p 337 PRYNGVRWK--AKKWTSEIRPT---GAKRTVWLGTYNTEEEAASAYDAGIYYYN 385 6899****5..68*****9993...335*******************9777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.38E-13 | 337 | 395 | No hit | No description |
Pfam | PF00847 | 3.0E-7 | 337 | 379 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-11 | 338 | 395 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-5 | 338 | 399 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-15 | 338 | 395 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.088 | 338 | 400 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MWTPTGNRQS DNISKMEDGA NNRTKTRRRV INQVRVFAGT VKWSYLEMED DLKCRFWNFF 60 SGNKSKCNNK NCPTCYPKPV ETTESSHFRD GRISTLLQKI RTWPRLGSRR IRNHTAQGAQ 120 QPQPGQSPLP GRMKAASFPA KHRDLSRARF LPRFKKFESI REESDYSGST RAENQLPKAS 180 ESLYTLPVVE VDIGGNDTES TSVEDLSKYS YSFGSDMSFG NRDDSMAKDQ SMSRDIPSTM 240 IQNIDPPRNT GQDTHPTSAS SAEVSESAGP TFQSRGYAVP FQGSSLGPTT PSPAGSSEVA 300 DSLRTTYDHG WHTQTTDQIE SPVPEPCALH VEKIPQPRYN GVRWKAKKWT SEIRPTGAKR 360 TVWLGTYNTE EEAASAYDAG IYYYNKPRNY NFPDSETYLP RLNPSMDDRA QLNFIKTQAR 420 LIAQKRAKIM AEHTAVPRRN SHPSEFNPRT PDTPSSEAGP ADSRPGMGEP SRSSSIFTSL 480 KRVLSGDSGF SKTSRRKY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367815.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367816.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367817.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367818.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367819.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367820.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
Refseq | XP_024367821.1 | 0.0 | uncharacterized protein LOC112278487 | ||||
TrEMBL | A9TNY5 | 0.0 | A9TNY5_PHYPA; Predicted protein | ||||
STRING | PP1S276_57V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_5350V3.3.p |
Entrez Gene | 5943508 |
Publications ? help Back to Top | |||
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