PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_5180V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 381aa    MW: 41634.1 Da    PI: 7.5768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_5180V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18312361356
                AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++ a+++l+g+
  Pp3c27_5180V3.2.p 312 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 361
                        79******.**********32....25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-28311368IPR001471AP2/ERF domain
PROSITE profilePS5103221.838311368IPR001471AP2/ERF domain
SMARTSM003801.5E-30311374IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-20312369IPR016177DNA-binding domain
PfamPF008473.2E-12312360IPR001471AP2/ERF domain
PRINTSPR003671.1E-9312323IPR001471AP2/ERF domain
CDDcd000184.01E-29312369No hitNo description
PRINTSPR003671.1E-9334350IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MALHDMLLSS RILTKRKRRD ETSEVPIKNT IIGGFRGNSD QNKDRTWIAC HQCSGSTLHS  60
HSNRCVLHCS SPKYISDFVM EGAATLDESS VDSYGNTLSG GSESFGVFHT NFHCRGADGS  120
DDQLLLPITS PFTSIGTSLP SNSDLEQLDL DGIAAVIGHN VLFGTNRYSE GRYAYSNTMT  180
TIRSQPSSWN SRIPFEVDDK IAQMMPSLTA NIPGLNRESG GNQHADGFNA ELPKFSMENS  240
SITSSNSLSK PEISRLSSQL QDVREAIASE FNLDSLKQSC GEMVGPQVTS RTATSADSAA  300
RRETAGKMGR AFRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEDAARA YDSAARALRG  360
AKAKTNFEVG YTSESIQTHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15309373368ATERF1
3gcc_A1e-15309373368ATERF1
5wx9_A1e-153123671571Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367802.10.0uncharacterized protein LOC112278481
RefseqXP_024367803.10.0uncharacterized protein LOC112278481
RefseqXP_024367804.10.0uncharacterized protein LOC112278481
RefseqXP_024367805.10.0uncharacterized protein LOC112278481
RefseqXP_024367807.10.0uncharacterized protein LOC112278481
RefseqXP_024367808.10.0uncharacterized protein LOC112278481
TrEMBLA0A2K1IAS50.0A0A2K1IAS5_PHYPA; Uncharacterized protein
STRINGPP1S276_72V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-20ERF family protein