PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_4140V3.3.p | ||||||||
Common Name | PHYPADRAFT_163270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 507aa MW: 55938.4 Da PI: 8.4432 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 223 | 243 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C ksF+ +s+++ H+ tH Pp3c27_4140V3.3.p 223 CEACEKSFTVPSQYTAHMHTH 243 9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 219 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.17 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 221 | 248 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 37 | 244 | 268 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF10453 | 5.5E-11 | 283 | 322 | IPR019496 | Nuclear fragile X mental retardation-interacting protein 1, conserved domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000492 | Biological Process | box C/D snoRNP assembly | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0048046 | Cellular Component | apoplast | ||||
GO:0030515 | Molecular Function | snoRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MRPASHNMYG QPAYTLPQNP VQYYAVPGNS PVPHYGRNSQ DAQPQLQPVY LVHHQQPAMA 60 MQPYPAVVGM PTQVVGNPIP QAMAVPGVPG YGAQGWAYRP VMVEPPPNVP VWGYGPDQSR 120 GYSEQQQQQQ ELRNSSNWQR GPQQGYGRSG AAVPGGFHGR AEVHSSSPSL GNPSGDSRRP 180 DRGFESSNGG RHHPSGGPGR QHMNRQAPIP QSPASSQSKQ LNCEACEKSF TVPSQYTAHM 240 HTHVQCDETG CSFSASGKVV KEHKLTAHRK SNNPNVMVAL KASEEDDDEI RAWREERMRN 300 YPTRSNIQRK KEALEGKVAR GELIDEDTRK RQQRMKEILA KQAELGVPVA EVPAHYLSQS 360 YKEDRGRGRC KKGFKCHFAH TGPRGKKGGD NEAGRGGPKG VGVEKKRPPT LLSKLLQGEI 420 NRDKSYILQC LRYFVNNNFL LNWPNQLSES IELPEQSDDA HESSDYSEGE VVEAPDVLLA 480 DTAIINTLLS ERPEVLAKVV EMETEA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367228.1 | 0.0 | nuclear fragile X mental retardation-interacting protein 1-like | ||||
TrEMBL | A9S7H1 | 0.0 | A9S7H1_PHYPA; Predicted protein | ||||
STRING | PP1S54_68V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_4140V3.3.p |
Entrez Gene | 5925500 |
Publications ? help Back to Top | |||
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