PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_4140V3.1.p
Common NamePHYPADRAFT_163270
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 615aa    MW: 67556.9 Da    PI: 7.8598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_4140V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05223243323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C+ C ksF+ +s+++ H+ tH
  Pp3c27_4140V3.1.p 223 CEACEKSFTVPSQYTAHMHTH 243
                        9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-4219243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM0035537244268IPR015880Zinc finger, C2H2-like
PfamPF104537.0E-11283322IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
PROSITE profilePS5010314.464464491IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000492Biological Processbox C/D snoRNP assembly
GO:0005634Cellular Componentnucleus
GO:0048046Cellular Componentapoplast
GO:0030515Molecular FunctionsnoRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MRPASHNMYG QPAYTLPQNP VQYYAVPGNS PVPHYGRNSQ DAQPQLQPVY LVHHQQPAMA  60
MQPYPAVVGM PTQVVGNPIP QAMAVPGVPG YGAQGWAYRP VMVEPPPNVP VWGYGPDQSR  120
GYSEQQQQQQ ELRNSSNWQR GPQQGYGRSG AAVPGGFHGR AEVHSSSPSL GNPSGDSRRP  180
DRGFESSNGG RHHPSGGPGR QHMNRQAPIP QSPASSQSKQ LNCEACEKSF TVPSQYTAHM  240
HTHVQCDETG CSFSASGKVV KEHKLTAHRK SNNPNVMVAL KASEEDDDEI RAWREERMRN  300
YPTRSNIQRK KEALEGKVAR GELIDEDTRK RQQRMKEILA KQAELGVPVA EVPAHYLSQS  360
YKEDRGRGRK SLAGEGVTTS MNGADSKKRK LEEDASVTTG TVEQPSKFAR VNVGLSNSDS  420
NSGADLPSKS ESENPQDRVV AQSIEESDTR HEDKDEAVGK PSDKPGKTQC YFYQRGRCKK  480
GFKCHFAHTG PRGKKGGDNE AGRGGPKGVG VEKKRPPTLL SKLLQGEINR DKSYILQCLR  540
YFVNNNFLLN WPNQLSESIE LPEQSDDAHE SSDYSEGEVV EAPDVLLADT AIINTLLSER  600
PEVLAKVVEM ETEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367228.10.0nuclear fragile X mental retardation-interacting protein 1-like
TrEMBLA9S7H10.0A9S7H1_PHYPA; Predicted protein
STRINGPP1S54_68V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP852622
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]