PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_400V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 423aa    MW: 45976.4 Da    PI: 8.3198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09275322455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pp3c27_400V3.1.p 275 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 322
                       8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-10269326No hitNo description
SuperFamilySSF474591.18E-16269336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16271334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6275322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MYAMDKLRAA MSYPHDLGRT TDLTKEGLAL QEGSTQHSLQ QLSHDPSFAE RAAKYSTFGA  60
SNFPQAPIYS SVFVTGELRS VLEKESKISR SANISTALGA LSNGDAQPLP EANFRDAGDG  120
GANVALSSEE TKLKFHRNQL NSGVGGIEGA KASTNQSNEG IIFQENSVCS QQAPTLATAH  180
RKRKGNSSAE GKDKSSEGSK LMEASTDNSA PLKRHKSDGE DVRAVKAEQA SASENSGDSI  240
SPRSTLKGAT SKRPQDFPKQ DYIHVRARRG QATDSHSLAE RVRREKISER MKFLQDLVPG  300
CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNVPRL DYSYDLLSKE MPMQSRSPET  360
TLLGPDPLAA PFGDHSQCSP MQSISTPSCH FEALYLRRSM SVPTMMSRFD SAGHFSDLFS  420
QV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367328.10.0transcription factor bHLH77-like
TrEMBLA0A2K1IA370.0A0A2K1IA37_PHYPA; Uncharacterized protein
STRINGPP1S280_32V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-53bHLH family protein