PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c27_3080V3.3.p

Common Name

PHYPADRAFT_163335

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 570aa MW: 62721.6 Da PI: 10.3697

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c27_3080V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	31.9	2.3e-10	362	388	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++le G C++ Pvk KRC+ HK Pp3c27_3080V3.3.p 362 CGALLESGLSCSALPVKSSKRCRLHKK 388 **************************5 PP
2	HRT-like	51.3	1.9e-16	522	551	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ledG+vC ++P ++RKRCe+HKG R Pp3c27_3080V3.3.p 522 ICGLRLEDGTVCLDPPRPDRKRCEAHKGLR 551 8***************************99 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MGLVCDMKAV NVREKKKRLK REEYTHVKHD KSFSDWKVLV GSSDWKDHAS GKIPDRYRVS 60 NLPGSNSGPG VYEIGVTPPA WLPSQRSNHS GSLKPQDVVV VYLGCADNVN YHLHRYGQTG 120 AHLEGIRSAR LFNAKNELGS TPKLPQLDKS RSLASESSNT SSDRAPGTDG GYTSIESYGS 180 SDPTDEYQAK SEKKSANPSD QVGSRSPMRG PRLFSEAFAL GCSIAFRWAA TDSKEAAERT 240 ESKLIDVFDY AWKRGGKFRQ RSPEILAKIV KRGALGSNDS HGCFGESSGR VFFVFKRRRV 300 GVTIAARQPS DNSRPFVGSS SRGTDSSKIA AFFAYKFNPP VLVGKSAKTS EFTKLDIPVN 360 RCGALLESGL SCSALPVKSS KRCRLHKKPS HKKPARVAHT SSPTHDSSEV LVRVTQPTEQ 420 GDRPLKRPSP ESSISCFSCL SHSSQVRSNP PEPKRRGSLS FNSWLRTSEL RMAKSREWAE 480 LKNPLGPRPE GTKLSATSYS NILATCEESA CESSRLSTRR DICGLRLEDG TVCLDPPRPD 540 RKRCEAHKGL RNQARPQSPN TYPLRQGMF*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MGLVCDMKAV NVREKKKRLK REEYTHVKHD KSFSDWKVLV GSSDWKDHAS GKIPDRYRVS  60
NLPGSNSGPG VYEIGVTPPA WLPSQRSNHS GSLKPQDVVV VYLGCADNVN YHLHRYGQTG  120
AHLEGIRSAR LFNAKNELGS TPKLPQLDKS RSLASESSNT SSDRAPGTDG GYTSIESYGS  180
SDPTDEYQAK SEKKSANPSD QVGSRSPMRG PRLFSEAFAL GCSIAFRWAA TDSKEAAERT  240
ESKLIDVFDY AWKRGGKFRQ RSPEILAKIV KRGALGSNDS HGCFGESSGR VFFVFKRRRV  300
GVTIAARQPS DNSRPFVGSS SRGTDSSKIA AFFAYKFNPP VLVGKSAKTS EFTKLDIPVN  360
RCGALLESGL SCSALPVKSS KRCRLHKKPS HKKPARVAHT SSPTHDSSEV LVRVTQPTEQ  420
GDRPLKRPSP ESSISCFSCL SHSSQVRSNP PEPKRRGSLS FNSWLRTSEL RMAKSREWAE  480
LKNPLGPRPE GTKLSATSYS NILATCEESA CESSRLSTRR DICGLRLEDG TVCLDPPRPD  540
RKRCEAHKGL RNQARPQSPN TYPLRQGMF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	299	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.17522	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367281.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2K1IAG3	0.0	A0A2K1IAG3_PHYPA; Uncharacterized protein
STRING	PP1S54_246V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-19	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c27_3080V3.3.p
Entrez Gene	5925522

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]