PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c27_1350V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 34764.6 Da PI: 7.312 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a++ a+++l+g Pp3c27_1350V3.2.p 23 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 72 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.6E-36 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-31 | 23 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 23 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-13 | 23 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 23 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.0E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MAQRGDDGVG ITAKAHQADQ GDHFRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA 60 RAYDSAARAL RGTKAKTNFA SPPHSGDDQS MTSQSSTVES LSNGSLKQSG HHPSKSIQSN 120 HYRSTVGALD TSSWRNRLDL NISVAQDSLF VVDDGGQHQY KSVSAGRSCV EEGVTCALSS 180 IRVAPNPIQV PFEEAGHVAD SKRQRTLKKP TPITPTEGLS VGCDWLGSLA TTALGMQQQL 240 SETTPETRAC HSDCDSSSSV ILNSEAACAT PPTPHDAKPV MRRTAYPFLL DLNQPPCSLE 300 HQGPAIETDF GLSRPGIQVF LN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 20 | 87 | 2 | 70 | ATERF1 |
3gcc_A | 2e-21 | 20 | 87 | 2 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.5069 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367682.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A2K1IA66 | 0.0 | A0A2K1IA66_PHYPA; Uncharacterized protein | ||||
STRING | PP1S487_24V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-24 | ERF domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c27_1350V3.2.p |