PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_1350V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 323aa    MW: 34764.6 Da    PI: 7.312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_1350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-202372255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++ a+++l+g
  Pp3c27_1350V3.1.p 23 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 72
                       69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-362386IPR001471AP2/ERF domain
CDDcd000181.44E-312380No hitNo description
Gene3DG3DSA:3.30.730.103.1E-312380IPR001471AP2/ERF domain
PROSITE profilePS5103222.8132380IPR001471AP2/ERF domain
PfamPF008472.2E-132372IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-212380IPR016177DNA-binding domain
PRINTSPR003677.0E-112435IPR001471AP2/ERF domain
PRINTSPR003677.0E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAQRGDDGVG ITAKAHQADQ GDHFRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA  60
RAYDSAARAL RGTKAKTNFA SPPHSGDDQS MTSQSSTVES LSNGSLKQSG HHPSKSIQSN  120
HYRSTVGALD TSSWRNRLDL NISVAQDSLF VVDDGGQHQY KSVSAGRSCV EEGVTCALSS  180
IRVAPNPIQV PFEEAGHVAD SKRQRTLKKP TPITPTEGLS VGCDWLGSLA TTALGMQQQL  240
SETTPETRAC HSDCDSSSSV ILNSEAACAT PPTPHDAKPV MRRTAYPFLL DLNQPPCSLE  300
HQGPAIETDF GLSRPGIQVF LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212087270ATERF1
3gcc_A2e-212087270ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.50690.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367682.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2K1IA660.0A0A2K1IA66_PHYPA; Uncharacterized protein
STRINGPP1S487_24V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-24ERF domain protein 12