PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_9880V3.2.p | ||||||||
Common Name | PHYPADRAFT_65352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 676aa MW: 73860.2 Da PI: 6.8469 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+tae+Aa a++ a+++++g Pp3c26_9880V3.2.p 60 RYRGVRRRP-WGRYAAEIRDPNT---KERRWLGTFDTAEDAALAYDTAARSMRG 109 69*******.**********933...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-11 | 60 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.3 | 60 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 60 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.34E-29 | 60 | 116 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 60 | 117 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MVGKVQTASS LGQASEQSTA VDASGSSRHT LVPEKMGSRS VSQKLKAASI KRAKKVQEGR 60 YRGVRRRPWG RYAAEIRDPN TKERRWLGTF DTAEDAALAY DTAARSMRGL KARTNFMYPT 120 HETCLLSAAA ALAAPNSLQH ATHPVDLIAQ KTLGEVLLLS STNKSRNFDW QSTTTTCITQ 180 PSFDESSRNM LNSPSTQKQL VEFERNLFPG QGCRYVDRKI QPPSQQMPRS VLVEMSPNVL 240 QSFKENKVET AESSLSVSPG MEEQWRCLPE SDMQFRPNQL VRSPTANSGL LVSRYRSAEL 300 QPFQVTRSND NAPMASENAS MFGGSSIICS KAVSTTSSCK LSQRSRPLFS SENVGGMLDQ 360 VVSKYVVDST GPTPSTVAVE DTGGVIESKE CLLSTQVPYS DESSSSTSAS RFADTAESSP 420 TTGAAGSPGL FSLSSEVEPT CGFSAATADV CRRPSAFQLV PSNRNPDNLE SILPANLIYN 480 RHHHNAPRRA EWAWDMPVAR TTSSSGLDAI TGHCNSVSLQ RHNCSHESSW QNLCELPDAV 540 ANFLLSESMQ GFNTTTSTHC VNVSVKKHEP SLQHRSYEPT PALASNSPWQ MSHSRVTGNS 600 ESINVLADWD STRSQDPSLG YSLCPENNSG LCNDMFMPDN NCLHVFNATG SSHYPFYDDG 660 YLFPHLMEES SMLYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 52 | 116 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366243.1 | 0.0 | uncharacterized protein LOC112277772 | ||||
TrEMBL | A9RFA4 | 0.0 | A9RFA4_PHYPA; Predicted protein | ||||
STRING | PP1S6_75V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 6e-13 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_9880V3.2.p |
Entrez Gene | 5916063 |
Publications ? help Back to Top | |||
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