PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_9880V3.1.p
Common NamePHYPADRAFT_65352
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 676aa    MW: 73860.2 Da    PI: 6.8469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_9880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1860109255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  Pp3c26_9880V3.1.p  60 RYRGVRRRP-WGRYAAEIRDPNT---KERRWLGTFDTAEDAALAYDTAARSMRG 109
                        69*******.**********933...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1160109IPR001471AP2/ERF domain
PROSITE profilePS5103222.360117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2960117IPR001471AP2/ERF domain
SMARTSM003804.8E-3460123IPR001471AP2/ERF domain
CDDcd000184.34E-2960116No hitNo description
SuperFamilySSF541711.05E-2060117IPR016177DNA-binding domain
PRINTSPR003675.6E-96172IPR001471AP2/ERF domain
PRINTSPR003675.6E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVGKVQTASS LGQASEQSTA VDASGSSRHT LVPEKMGSRS VSQKLKAASI KRAKKVQEGR  60
YRGVRRRPWG RYAAEIRDPN TKERRWLGTF DTAEDAALAY DTAARSMRGL KARTNFMYPT  120
HETCLLSAAA ALAAPNSLQH ATHPVDLIAQ KTLGEVLLLS STNKSRNFDW QSTTTTCITQ  180
PSFDESSRNM LNSPSTQKQL VEFERNLFPG QGCRYVDRKI QPPSQQMPRS VLVEMSPNVL  240
QSFKENKVET AESSLSVSPG MEEQWRCLPE SDMQFRPNQL VRSPTANSGL LVSRYRSAEL  300
QPFQVTRSND NAPMASENAS MFGGSSIICS KAVSTTSSCK LSQRSRPLFS SENVGGMLDQ  360
VVSKYVVDST GPTPSTVAVE DTGGVIESKE CLLSTQVPYS DESSSSTSAS RFADTAESSP  420
TTGAAGSPGL FSLSSEVEPT CGFSAATADV CRRPSAFQLV PSNRNPDNLE SILPANLIYN  480
RHHHNAPRRA EWAWDMPVAR TTSSSGLDAI TGHCNSVSLQ RHNCSHESSW QNLCELPDAV  540
ANFLLSESMQ GFNTTTSTHC VNVSVKKHEP SLQHRSYEPT PALASNSPWQ MSHSRVTGNS  600
ESINVLADWD STRSQDPSLG YSLCPENNSG LCNDMFMPDN NCLHVFNATG SSHYPFYDDG  660
YLFPHLMEES SMLYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2152116671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366243.10.0uncharacterized protein LOC112277772
TrEMBLA9RFA40.0A9RFA4_PHYPA; Predicted protein
STRINGPP1S6_75V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-13DORNROSCHEN-like
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]