PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_8280V3.4.p

Common Name

PHYPADRAFT_91907

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YB

Protein Properties

Length: 162aa MW: 17655.4 Da PI: 4.4983

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_8280V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	47.8	3.5e-15	12	111	6	95
NF-YB 6 rflPianvsrimkkvlPana..........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 + lP anv r++k l + a + kda e + fi f+++ a++ c++ kr+t+n+dd+l a+ +l f ++ epl l Pp3c26_8280V3.4.p 12 EDLPQANVKRVVKTKLQELAlghygeerdvSVNKDALLAFSESAKIFIHFLSATANEICRESKRQTVNADDVLKAVEELDFPEFSEPLMRCL 103 569********988753322222222226889999999************************************************ PP NF-YB 88 kkyreleg 95 + +r+ ++ Pp3c26_8280V3.4.p 104 AAFRKDQE 111 *98655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.1E-25	13	127	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-33	13	146	IPR009072	Histone-fold
Pfam	PF00808	3.9E-11	14	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGGGGAAQGE GEDLPQANVK RVVKTKLQEL ALGHYGEERD VSVNKDALLA FSESAKIFIH 60 FLSATANEIC RESKRQTVNA DDVLKAVEEL DFPEFSEPLM RCLAAFRKDQ EAKKQDKRKS 120 SGASTPRKRK SDGNFVDDNP AANEDYEDGV AMADDDDTTD N*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366136.1	1e-115	DNA polymerase epsilon subunit 3-like
Refseq	XP_024366137.1	1e-115	DNA polymerase epsilon subunit 3-like
TrEMBL	A9TF10	1e-114	A9TF10_PHYPA; Predicted protein
STRING	PP1S217_34V6.1	1e-115	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-31	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Pp3c26_8280V3.4.p
Entrez Gene	5940420

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]