PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_8280V3.1.p | ||||||||
Common Name | PHYPADRAFT_91907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 17655.4 Da PI: 4.4983 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.8 | 3.5e-15 | 12 | 111 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPana..........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 + lP anv r++k l + a + kda e + fi f+++ a++ c++ kr+t+n+dd+l a+ +l f ++ epl l Pp3c26_8280V3.1.p 12 EDLPQANVKRVVKTKLQELAlghygeerdvSVNKDALLAFSESAKIFIHFLSATANEICRESKRQTVNADDVLKAVEELDFPEFSEPLMRCL 103 569**********988753322222222226889999999**************************************************** PP NF-YB 88 kkyreleg 95 + +r+ ++ Pp3c26_8280V3.1.p 104 AAFRKDQE 111 ***98655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.1E-25 | 13 | 127 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-33 | 13 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-11 | 14 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGGGGAAQGE GEDLPQANVK RVVKTKLQEL ALGHYGEERD VSVNKDALLA FSESAKIFIH 60 FLSATANEIC RESKRQTVNA DDVLKAVEEL DFPEFSEPLM RCLAAFRKDQ EAKKQDKRKS 120 SGASTPRKRK SDGNFVDDNP AANEDYEDGV AMADDDDTTD N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366136.1 | 1e-115 | DNA polymerase epsilon subunit 3-like | ||||
Refseq | XP_024366137.1 | 1e-115 | DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A9TF10 | 1e-114 | A9TF10_PHYPA; Predicted protein | ||||
STRING | PP1S217_34V6.1 | 1e-115 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7862 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-31 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_8280V3.1.p |
Entrez Gene | 5940420 |
Publications ? help Back to Top | |||
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