PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_700V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 139aa MW: 15412.2 Da PI: 5.9669 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 28.7 | 2.8e-09 | 52 | 107 | 14 | 69 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 +++ ++P++r++++ k++ d++ + ea l++ka elf+ +l ++ + ++n Pp3c26_700V3.2.p 52 QNLLTLSFPISRVRRLAKSEGDIQWVGVEAGFLIAKATELFLEKLVEDAFGRMRDN 107 5666789**********************************988877666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-13 | 56 | 117 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.19E-11 | 58 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-6 | 58 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MSTTNSESEV QRSYEDDERK ENGYSYEENG NKSENGTPAS WRASGKPGKS LQNLLTLSFP 60 ISRVRRLAKS EGDIQWVGVE AGFLIAKATE LFLEKLVEDA FGRMRDNRQA SILYPHLYIV 120 PVRIPAATAL QNASMADK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366079.1 | 6e-94 | putative transcription factor C16C4.22 | ||||
TrEMBL | A0A2K1J3J8 | 2e-68 | A0A2K1J3J8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S149_89V6.1 | 4e-81 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8670 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-10 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_700V3.2.p |