PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_6730V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 303aa    MW: 32220.9 Da    PI: 8.8089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_6730V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12141185347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Pp3c26_6730V3.2.p 141 PWSEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 185
                        7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5921166IPR017884SANT domain
SMARTSM007171.7E-61264IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-111469IPR009057Homeodomain-like
CDDcd001675.85E-61658No hitNo description
PROSITE profilePS5129416.96133190IPR017930Myb domain
SuperFamilySSF466895.52E-16136191IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-16138188IPR006447Myb domain, plants
SMARTSM007171.1E-10138188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-11139184IPR009057Homeodomain-like
CDDcd001675.60E-10141186No hitNo description
PfamPF002495.8E-11141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAESQSSLTT ASGSVWTREQ DKEFENALNN FDEDTPNRWE QIAAVVTGKD AAEVKRHYEI  60
LQEDVNLIDS GRVALPNYSL SSLSLSEEGA ASDSPGVKKG TSFSGQVSGP SANANGNGNA  120
ALGGKGMSSK SADQERRKGI PWSEEEHRLF LLGLAKFGKG DWRSISRNFV ISRTPTQVAS  180
HAQKYFIRLN SINKDKRRSS IHDITSVNNG DAAQQGQGPI TGQPGPGSAT GQPIPGGMQP  240
GMYPGQQMIG QPPAVGAPVM LPPPGHVSYG PRGHLPRPVM PGQQMGMAPH MSYPMSQPGM  300
HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-17978473RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.135080.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.10.0transcription factor SRM1-like
RefseqXP_024366443.10.0transcription factor SRM1-like
SwissprotQ9FNN66e-80SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2K1IC530.0A0A2K1IC53_PHYPA; Uncharacterized protein
STRINGPP1S256_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-59MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]