PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_5095V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 724aa MW: 79294.2 Da PI: 6.3231 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.5e-32 | 387 | 445 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK vk+s++pr+YYrCt+++Cpv+k+vers+ed +v++tYeg+H+h+ Pp3c26_5095V3.1.p 387 MDDGFKWRKYGQKAVKNSPHPRNYYRCTTPQCPVRKRVERSSEDAGLVITTYEGTHTHQ 445 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 372 | 447 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-29 | 380 | 447 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.146 | 382 | 447 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-38 | 387 | 446 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 388 | 445 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MAGRPAPIEQ HGEGVTESAS YLEHLLQRLE NTADQDQAAV PSPTTSTRGV DPNYDASSPI 60 PANLWQHLSS SNPSSPRDYY NLIQSPIPTT NFPRDTVVEN PWMEELEQQK IAASQAQHMT 120 ASAAVDEGHR SRDAIGQLPP VPGDNLNQHR LDQLYPFASS SAEHGVVSSD ALLYEGGAAQ 180 WYRSGGYFGP ESYLPRGGEA FYRNFAPMES SGTQSSDSAS GIPQFDGRNL KSCSNGRDEA 240 RIGWDQSIAS QFARSSETHP ESDVNRAIPL PTQASLPSVA GNANTEPGAS TRSENSMGTP 300 NTSLSSGPSD ESDYEECTRN VEPPGTDNSG KRKIREPPGE EGDDSARTSE VELKKTAFEN 360 LPRKKGNAAR RREPRFAIKT RTDVDIMDDG FKWRKYGQKA VKNSPHPRNY YRCTTPQCPV 420 RKRVERSSED AGLVITTYEG THTHQTPGVL RSPGSIRPLE PGGRLYQNPV NPAGLGPRGN 480 LLPLPPEFSL AALSQLRSLQ QSARSLQGLG IPPGPRFPGS FLRESLNRAQ QFLGLHDPAF 540 GSIKAEPYHF RSLDFLPGGF CYGFPYPGTI FPSTGIPETM YMMRPQHGRP RSDPSQTRNH 600 NPAMADPDYL DLPQQTTPPT EGDLVRRVLE AEEKELVDAV RRGISTNVDD LTATASTFNQ 660 GSAASPHENF ASRLQSSPRN RVEVERMRAL QARAALQQRE VGSSSDNQTR SQRRQQPPNS 720 NED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 377 | 447 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 377 | 447 | 7 | 77 | Probable WRKY transcription factor 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366205.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A2K1IBX7 | 0.0 | A0A2K1IBX7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S159_105V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 3e-34 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_5095V3.1.p |