PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_5090V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 724aa    MW: 79294.2 Da    PI: 6.3231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_5090V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32387445159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDg++WrKYGqK vk+s++pr+YYrCt+++Cpv+k+vers+ed  +v++tYeg+H+h+
  Pp3c26_5090V3.1.p 387 MDDGFKWRKYGQKAVKNSPHPRNYYRCTTPQCPVRKRVERSSEDAGLVITTYEGTHTHQ 445
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34372447IPR003657WRKY domain
SuperFamilySSF1182907.72E-29380447IPR003657WRKY domain
PROSITE profilePS5081131.146382447IPR003657WRKY domain
SMARTSM007744.8E-38387446IPR003657WRKY domain
PfamPF031062.5E-25388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MAGRPAPIEQ HGEGVTESAS YLEHLLQRLE NTADQDQAAV PSPTTSTRGV DPNYDASSPI  60
PANLWQHLSS SNPSSPRDYY NLIQSPIPTT NFPRDTVVEN PWMEELEQQK IAASQAQHMT  120
ASAAVDEGHR SRDAIGQLPP VPGDNLNQHR LDQLYPFASS SAEHGVVSSD ALLYEGGAAQ  180
WYRSGGYFGP ESYLPRGGEA FYRNFAPMES SGTQSSDSAS GIPQFDGRNL KSCSNGRDEA  240
RIGWDQSIAS QFARSSETHP ESDVNRAIPL PTQASLPSVA GNANTEPGAS TRSENSMGTP  300
NTSLSSGPSD ESDYEECTRN VEPPGTDNSG KRKIREPPGE EGDDSARTSE VELKKTAFEN  360
LPRKKGNAAR RREPRFAIKT RTDVDIMDDG FKWRKYGQKA VKNSPHPRNY YRCTTPQCPV  420
RKRVERSSED AGLVITTYEG THTHQTPGVL RSPGSIRPLE PGGRLYQNPV NPAGLGPRGN  480
LLPLPPEFSL AALSQLRSLQ QSARSLQGLG IPPGPRFPGS FLRESLNRAQ QFLGLHDPAF  540
GSIKAEPYHF RSLDFLPGGF CYGFPYPGTI FPSTGIPETM YMMRPQHGRP RSDPSQTRNH  600
NPAMADPDYL DLPQQTTPPT EGDLVRRVLE AEEKELVDAV RRGISTNVDD LTATASTFNQ  660
GSAASPHENF ASRLQSSPRN RVEVERMRAL QARAALQQRE VGSSSDNQTR SQRRQQPPNS  720
NED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25377447777Probable WRKY transcription factor 4
2lex_A2e-25377447777Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366205.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2K1IBX70.0A0A2K1IBX7_PHYPA; Uncharacterized protein
STRINGPP1S159_105V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-34WRKY DNA-binding protein 28