PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_4390V3.1.p
Common NamePHYPADRAFT_167852
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 533aa    MW: 57949.2 Da    PI: 4.9747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_4390V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12301344755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eY+k+Lq
  Pp3c26_4390V3.1.p 301 VAERKRRKKLNERLYSLRALVPKI-----TKMDRASILGDAIEYVKELQ 344
                        68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-269156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.85E-15291348No hitNo description
PROSITE profilePS5088815.84294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16296354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17301354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10301344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.66E-6426496No hitNo description
Gene3DG3DSA:3.30.70.2606.7E-4428494No hitNo description
PROSITE profilePS516719.537429504IPR002912ACT domain
CDDcd048733.57E-7432494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSKPAGGVQE HLRSIVGPKG WDYAVFWQLH DETRSLDWTG CCCSGAEAAG NDVLVASSSS  60
RFLESSTGCP DVKGFHPDTH ICSLLASMPS SVSLDSGIQG RIFLGGQPKW VHMDPSMEGQ  120
DMAVQTKVCI PVQSGLVELG VANHVTENAA LVQYVRGSCG EPWQSKQGSS SNTALDAASG  180
GHGMMDQQAV KMYYSRHFPT NLENSWPSSH PWEQEDPMLE SQLLGGMDQE LIQLLGTNVH  240
FPHHAGPMAD SSPRGSGLSK DDGEVKQEIR GDSSDCSDPM EDDEEKGGPR SARRHLSKNL  300
VAERKRRKKL NERLYSLRAL VPKITKMDRA SILGDAIEYV KELQQQVKEL QEELLDSKEN  360
DMGTAGLGFE EAAVAAEEAN LGGAIDIGRC SGKVDSQAVT IEVIDRKGDH ELTQPMQVEV  420
SKMDGRLFSL RIFCEKRPGV FVKLMQALDV LGLSVVHANI TTFRGLVLNV FNAEVRDKEL  480
VGVEQMRDTL FEMASQSNHR SLALAATDPP ASLQPSSMSG DRLETITEGS FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-143023581268Transcription factor MYC2
5gnj_B3e-143023581268Transcription factor MYC2
5gnj_E3e-143023581268Transcription factor MYC2
5gnj_F3e-143023581268Transcription factor MYC2
5gnj_G3e-143023581268Transcription factor MYC2
5gnj_I3e-143023581268Transcription factor MYC2
5gnj_M3e-143023581268Transcription factor MYC2
5gnj_N3e-143023581268Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302309ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366750.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366751.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366752.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366753.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366754.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366755.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366756.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366757.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366758.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366759.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366760.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366761.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366762.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366763.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366765.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366766.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366767.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366768.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366769.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366770.10.0transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A2K1IBV00.0A0A2K1IBV0_PHYPA; Uncharacterized protein
STRINGPP1S159_28V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-69bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]