PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_4140V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 610aa    MW: 65277.9 Da    PI: 7.4206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_4140V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-07426447223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  Pp3c26_4140V3.3.p 426 FCEICGKGFKRDTNLRMHMRGH 447
                        6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-5422449No hitNo description
SMARTSM003550.0027425447IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217425452IPR007087Zinc finger, C2H2
PfamPF128743.1E-4426447No hitNo description
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-6427451IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355220475508IPR015880Zinc finger, C2H2-like
SMARTSM0035561513535IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MQGGNQQQLS IPSSDSLIAF ALLSQQLRQS SNNSPQFPHQ NHTMPSSSLG FSLDANVQKQ  60
AYPPQNYQPH AQLLPIGGGG GGQVNGGTRT GERIGKIFQN LQRRNLASNF DQQQLSSQMM  120
NPNILENLSS QLMVDQNVLS IMEHLSMLQD RILQLQALVP LISHTANSQI EGNAVAQQQA  180
ASAAVVSIVS QLAVIAIGLL PQSVEHTAGQ VNPSTDLPLS QLLQASLGQD PNFFQQDTVG  240
GQSRVPQRVT SLGNAIANGY GTSQTTVSGL GGLDNARFPS DSCGPRFPSG GGGFPNLNNE  300
GDIPGQQNVS GQHPVVSSGS EAILPNQISS GLGKEHGSIA GGEKRRRVAN SDFNPLDNSL  360
AAGANNLVCS EFGGMDAGLE NLNNDSRSDV DSVGDDGDVD PETIVSGSFD LVEMDASEIL  420
AEHTHFCEIC GKGFKRDTNL RMHMRGHGDE YKTSAALARP DKDSPDTTVT RLRRYSCPCV  480
GCKRNKKHGK FQPLKTILCV KNHYRRSHCP KVLTCQKCMT KKFSVVADLK THEKHCGRDK  540
WQCSCGTRFS RKDKLFGHIG LFAGHVPVVP LHELDGGNGG SINSGADYQG SPNPVPFGSD  600
NKGSRRLFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.20010.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366665.10.0uncharacterized protein LOC112277969
RefseqXP_024366667.10.0uncharacterized protein LOC112277969
RefseqXP_024366668.10.0uncharacterized protein LOC112277969
RefseqXP_024366669.10.0uncharacterized protein LOC112277969
RefseqXP_024366670.10.0uncharacterized protein LOC112277969
TrEMBLA0A2K1IBT80.0A0A2K1IBT8_PHYPA; Uncharacterized protein
STRINGPP1S159_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-90C2H2 family protein