PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_3820V3.1.p
Common NamePHYPADRAFT_173556
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 426aa    MW: 46211.7 Da    PI: 6.2337
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_3820V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.2e-32128182155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k rlrWtpeLHe+Fv av++LGG+++AtPk++l+lm+v+g+t++hvkSHLQkYRl
  Pp3c26_3820V3.1.p 128 KSRLRWTPELHEKFVIAVAHLGGADRATPKAVLRLMGVQGITIYHVKSHLQKYRL 182
                        68****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.933125185IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-30126183IPR009057Homeodomain-like
SuperFamilySSF466892.51E-17127182IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-24128183IPR006447Myb domain, plants
PfamPF002491.7E-8130181IPR001005SANT/Myb domain
PfamPF143795.0E-19214259IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MWNSDILQSP EEQAALPPEG VSLPPLPTAE PETDLFGGGG EWLTWNQLMP EEDVIASCWT  60
QLIDVEQDDG RTLNQSIKYV PLQTPLQVEP LASHPPTSEY PTSSSGAVSC GSPKPSSSAA  120
AKEASASKSR LRWTPELHEK FVIAVAHLGG ADRATPKAVL RLMGVQGITI YHVKSHLQKY  180
RLAKYMPEIS EEAKAERRKH DCLLTSLDLG SGHQIAQALQ MQMEVQKKLH EQLEIQRELQ  240
LRIEAQGLSL QKMLEQQAKL NHPDLPSGEP SAPANVVVPT PSSLAPSNSS NTTTLLEEQP  300
TGSGLVTHTP SYTDTTMERS KQKQIEAGST SPTSLDGHAA KRARTDASPQ VNLSGQEHNF  360
LAPSTKPSCT WESFSHQSPQ FQRLTRTGQD PQYLQTPTSG GSPQQAHADS IPQHPGRAAQ  420
KPVQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22128185259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.106920.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367104.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A2K1IBQ10.0A0A2K1IBQ1_PHYPA; Uncharacterized protein
STRINGPP1S490_9V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-59G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]