PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_3820V3.1.p | ||||||||
Common Name | PHYPADRAFT_173556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 426aa MW: 46211.7 Da PI: 6.2337 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.2e-32 | 128 | 182 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtpeLHe+Fv av++LGG+++AtPk++l+lm+v+g+t++hvkSHLQkYRl Pp3c26_3820V3.1.p 128 KSRLRWTPELHEKFVIAVAHLGGADRATPKAVLRLMGVQGITIYHVKSHLQKYRL 182 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.933 | 125 | 185 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 126 | 183 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 127 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-24 | 128 | 183 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 130 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.0E-19 | 214 | 259 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MWNSDILQSP EEQAALPPEG VSLPPLPTAE PETDLFGGGG EWLTWNQLMP EEDVIASCWT 60 QLIDVEQDDG RTLNQSIKYV PLQTPLQVEP LASHPPTSEY PTSSSGAVSC GSPKPSSSAA 120 AKEASASKSR LRWTPELHEK FVIAVAHLGG ADRATPKAVL RLMGVQGITI YHVKSHLQKY 180 RLAKYMPEIS EEAKAERRKH DCLLTSLDLG SGHQIAQALQ MQMEVQKKLH EQLEIQRELQ 240 LRIEAQGLSL QKMLEQQAKL NHPDLPSGEP SAPANVVVPT PSSLAPSNSS NTTTLLEEQP 300 TGSGLVTHTP SYTDTTMERS KQKQIEAGST SPTSLDGHAA KRARTDASPQ VNLSGQEHNF 360 LAPSTKPSCT WESFSHQSPQ FQRLTRTGQD PQYLQTPTSG GSPQQAHADS IPQHPGRAAQ 420 KPVQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-22 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10692 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367104.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
TrEMBL | A0A2K1IBQ1 | 0.0 | A0A2K1IBQ1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S490_9V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_3820V3.1.p |
Entrez Gene | 5948817 |
Publications ? help Back to Top | |||
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