PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_2630V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 283aa    MW: 31126.2 Da    PI: 8.8363
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_2630V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-1442117171
           trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                        rWtk+e l L++a+++  +r+ +++     +   +W  + +++++ g+er + qC+++w +l k+ykkik+ ek r
  Pp3c26_2630V3.2.p  42 RWTKHESLILVAAKSKELDRSLDSSakgvdASDVKWVTIFQYCKDLGVERDASQCRKRWHSLYKDYKKIKDYEKLR 117
                        8**************7777766654344448899**************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-437106IPR009057Homeodomain-like
PROSITE profilePS500906.2642104IPR017877Myb-like domain
PfamPF138373.6E-1042124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQEVAGGPAS GGGESRPPCA ATKSVSMSPR MEGPDKGQRG LRWTKHESLI LVAAKSKELD  60
RSLDSSAKGV DASDVKWVTI FQYCKDLGVE RDASQCRKRW HSLYKDYKKI KDYEKLRGGS  120
YWRMSAEQRR EQKLASSFEH EVFDVLEDYC KKLPAVSTKA TPEAAAVGKE EAGAGTGAGA  180
DEVESPGNGV SSEECGVGCS TDVTGCPKME GSPTKRKKRK RRPESMEERL LAAVESTSRN  240
LQLQLRHDRE LRTEEGKDLM KVLDRLLTSV GRIAEALEVR RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RKKRKR
2215221RKKRKRR
3216221KKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366091.10.0trihelix transcription factor ASR3-like
RefseqXP_024366094.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2K1IBK60.0A0A2K1IBK6_PHYPA; Uncharacterized protein
STRINGPP1S60_28V6.11e-154(Physcomitrella patens)
STRINGPP1S60_31V6.21e-154(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-14Trihelix family protein