PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_1890V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 353aa    MW: 39033.6 Da    PI: 9.6304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_1890V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1962111255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr +  +gr++AeIrd ++    ++r++lg+f+taeeAa+a++ a+++l+g
  Pp3c26_1890V3.3.p  62 HFRGVRKRL-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 111
                        69****887.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.19462119IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2062119IPR016177DNA-binding domain
PfamPF008472.9E-1262111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3062119IPR001471AP2/ERF domain
CDDcd000184.09E-3062119No hitNo description
SMARTSM003802.7E-3462125IPR001471AP2/ERF domain
PRINTSPR003676.1E-106374IPR001471AP2/ERF domain
PRINTSPR003676.1E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSMASREEK GITKRRQGGN DEYGFEGRER NYEEEAGGGM TSMASREEKG ITKRRQAGQG  60
VHFRGVRKRL WGRFAAEIRD PWKKTRVWLG TFDTAEEAAR AYDSAARALR GSKAKTNFAC  120
APSSDDQSTN LNFTLKSWST PPKNHKLRHL HHQHPKILND NPNCGSTAVS DTTSWHFCVD  180
LNLSARAMPH DHHLQAHKMA QDLNQNTNAD FYGVSPGDVA EVVKSSKRPP STPIQTLFQQ  240
SSSRVEKSLT LSVPALKVSS TQWSPGNRKV HHHGFIAIEP AVMPETTSST SDCDSSSSVF  300
LNSDNPETKP RALQEASPFL IDLNFPPCLD KQPPITDVAK FGLPQPRIAA LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1859118262ATERF1
3gcc_A1e-1859118262ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366222.10.0ethylene-responsive transcription factor 3-like
RefseqXP_024366223.10.0ethylene-responsive transcription factor 3-like
TrEMBLA0A2K1IBG70.0A0A2K1IBG7_PHYPA; Uncharacterized protein
STRINGPP1S149_253V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-21ERF domain protein 11