PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_1890V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39033.6 Da PI: 9.6304 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 8.9e-19 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr + +gr++AeIrd ++ ++r++lg+f+taeeAa+a++ a+++l+g Pp3c26_1890V3.1.p 62 HFRGVRKRL-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDSAARALRG 111 69****887.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.194 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 62 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-12 | 62 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-30 | 62 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.09E-30 | 62 | 119 | No hit | No description |
SMART | SM00380 | 2.7E-34 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTSMASREEK GITKRRQGGN DEYGFEGRER NYEEEAGGGM TSMASREEKG ITKRRQAGQG 60 VHFRGVRKRL WGRFAAEIRD PWKKTRVWLG TFDTAEEAAR AYDSAARALR GSKAKTNFAC 120 APSSDDQSTN LNFTLKSWST PPKNHKLRHL HHQHPKILND NPNCGSTAVS DTTSWHFCVD 180 LNLSARAMPH DHHLQAHKMA QDLNQNTNAD FYGVSPGDVA EVVKSSKRPP STPIQTLFQQ 240 SSSRVEKSLT LSVPALKVSS TQWSPGNRKV HHHGFIAIEP AVMPETTSST SDCDSSSSVF 300 LNSDNPETKP RALQEASPFL IDLNFPPCLD KQPPITDVAK FGLPQPRIAA LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 59 | 118 | 2 | 62 | ATERF1 |
3gcc_A | 1e-18 | 59 | 118 | 2 | 62 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366222.1 | 0.0 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_024366223.1 | 0.0 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A2K1IBG7 | 0.0 | A0A2K1IBG7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S149_253V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_1890V3.1.p |