PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_1490V3.1.p

Common Name

PpDof2

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 498aa MW: 53164.1 Da PI: 8.1076

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_1490V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.5e-37	153	211	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnv vG+grrknk Pp3c26_1490V3.1.p 153 PDKLIPCPRCDSLETKFCYYNNYNVNQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKY 211 78999****************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	151	210	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	155	210	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.624	157	211	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	159	195	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSKLRKWMMK EDRESSAGSA DTSAIKLFGA TIAVSITDSG VSSKAATSMN ATVAKPCVSL 60 TGSEEVDGAS MQLEADEMGS SLGSTCNESS AGALNTSNAE MAIKDVNGEA QVFATFTREL 120 PQSVMQTIHG MVSQQKQRAL TVEEKKEQCS KKPDKLIPCP RCDSLETKFC YYNNYNVNQP 180 RHFCKSCQRY WTAGGTLRNV LVGAGRRKNK YGASQMKQED AEGANSGITT VRMDHHEGAQ 240 PMLPCTINPY VIKVPPMQLP QLATQCSPRQ VSDVQSTVTT SCKAVSSASA FQPAVPEMST 300 DSVSKLRQRS GTESTFEGKE TSSSISSVSA TETTSKYVLS SRVPPQQQAD QQAVWTKNSV 360 PLGYFNGAWP YGYNIGIGGV GPIPDNPAMC GPHPAAALAS SNLPNGMSPP PVNVWTGMWA 420 SGMPSGMPGM AGVPAVPFGW NVCQGGWTLP WRPVPAVAVQ PPAEVMHSGS ARKWDSASSE 480 DRVRKMARVE IPEKDVL*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSKLRKWMMK EDRESSAGSA DTSAIKLFGA TIAVSITDSG VSSKAATSMN ATVAKPCVSL  60
TGSEEVDGAS MQLEADEMGS SLGSTCNESS AGALNTSNAE MAIKDVNGEA QVFATFTREL  120
PQSVMQTIHG MVSQQKQRAL TVEEKKEQCS KKPDKLIPCP RCDSLETKFC YYNNYNVNQP  180
RHFCKSCQRY WTAGGTLRNV LVGAGRRKNK YGASQMKQED AEGANSGITT VRMDHHEGAQ  240
PMLPCTINPY VIKVPPMQLP QLATQCSPRQ VSDVQSTVTT SCKAVSSASA FQPAVPEMST  300
DSVSKLRQRS GTESTFEGKE TSSSISSVSA TETTSKYVLS SRVPPQQQAD QQAVWTKNSV  360
PLGYFNGAWP YGYNIGIGGV GPIPDNPAMC GPHPAAALAS SNLPNGMSPP PVNVWTGMWA  420
SGMPSGMPGM AGVPAVPFGW NVCQGGWTLP WRPVPAVAVQ PPAEVMHSGS ARKWDSASSE  480
DRVRKMARVE IPEKDVL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12711	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB626698	0.0	AB626698.1 Physcomitrella patens PpDof2 mRNA for Dof transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367108.1	0.0	uncharacterized protein LOC112278168
TrEMBL	H1ACS9	0.0	H1ACS9_PHYPA; Dof transcription factor
STRING	PP1S149_180V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-35	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Pp3c26_1490V3.1.p

Publications ? help Back to Top
Sugiyama T, et al. Involvement of PpDof1 transcriptional repressor in the nutrient condition-dependent growth control of protonemal filaments in Physcomitrella patens. J. Exp. Bot., 2012. 63(8): p. 3185-97 [PMID:22345635]