PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_14710V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 525aa    MW: 56989 Da    PI: 7.1676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_14710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19291341255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd s    +  r +lg+f+taeeAa a++ a+++l+g
  Pp3c26_14710V3.2.p 291 HYRGVRQRP-WGKFAAEIRDSSR---QgSRLWLGTFDTAEEAALAYDDAALRLRG 341
                         69*******.**********422...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-14291341IPR001471AP2/ERF domain
PROSITE profilePS5103223.802291349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-31291350IPR001471AP2/ERF domain
SMARTSM003804.2E-38291355IPR001471AP2/ERF domain
CDDcd000182.66E-21291349No hitNo description
SuperFamilySSF541712.55E-22291350IPR016177DNA-binding domain
PRINTSPR003671.1E-10292303IPR001471AP2/ERF domain
PRINTSPR003671.1E-10315331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MFVGLWTSGT RIDCDLTWTL ELNEENLVVN LYPSLQTPQV STMGGIMQAS LSFSEVYSNS  60
EQEYELGCPY HSCIVDDFDE VQTSALLSKT HQRDALLTWR SSTQQVAPAS RSSPSLTVTL  120
PSCSEVDIKS SMFSDLAGVL QDPESSSGCQ LFSLPASPWR SKRVHCSNLQ GLNMGNAHLS  180
VYGDGVTPPL SEHDVDDTFL FSSMKNDWTI LSPLKTAGTM PNLPSPLGRE LSPRPQLTAV  240
KEELVYVSEP IAPSNDETQR PVTAPAPKKS QTSNGATPSQ KAGAPRQSHM HYRGVRQRPW  300
GKFAAEIRDS SRQGSRLWLG TFDTAEEAAL AYDDAALRLR GSRALLNFPL RAASGRNVQL  360
LTTSRPKAPK QAPASRKPES QSQNKSGINS NQPRGQKRPL NTHEGDGDSS TISKKSCDLT  420
TFDAAAASLS ASSPEGNSKG RREMEVAVPD RTMTCAQALE DSKLNNFLEV LLKSPRQGGA  480
TPTSSTWCWP QMNYSPLSLF MPPLSPAIKP PSSPLSSPLP LFLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-30291355569ATERF1
3gcc_A1e-30291355569ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366251.10.0uncharacterized protein LOC112277774
TrEMBLA0A2K1ID270.0A0A2K1ID27_PHYPA; Uncharacterized protein
STRINGPP1S357_12V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-18ethylene-responsive element binding factor 13