PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_13950V3.3.p
Common NamePpVNS7
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 399aa    MW: 45379.4 Da    PI: 6.9402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_13950V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.3e-51101392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         p+GfrFhPtdeelv +yL+ kv + + +   +i+e+d+yk+ePwdL++       + +++++wyfFs++dkky+tg+r+nrat++g+Wkat
  Pp3c26_13950V3.3.p  10 PVGFRFHPTDEELVGYYLHGKVGRAQRDQ--FIQELDLYKIEPWDLHEvcrigdDAPENQSDWYFFSHKDKKYPTGNRANRATTAGFWKAT 98 
                         89********************9999655..8**************854655554444677****************************** PP

                 NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         g+dk++++ +++++g++ktLvfy+grap+g+ktdW+mhe+rl
  Pp3c26_13950V3.3.p  99 GRDKPIHT-QRHVIGMRKTLVFYRGRAPHGQKTDWIMHEFRL 139
                         ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-527182IPR003441NAC domain
PROSITE profilePS5100553.4099182IPR003441NAC domain
PfamPF023656.5E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNSNSNAPIP VGFRFHPTDE ELVGYYLHGK VGRAQRDQFI QELDLYKIEP WDLHEVCRIG  60
DDAPENQSDW YFFSHKDKKY PTGNRANRAT TAGFWKATGR DKPIHTQRHV IGMRKTLVFY  120
RGRAPHGQKT DWIMHEFRLD EGPGVVPNYF TTGVVGVLKS KGGIGLLVQE SDGWVVCRVF  180
RKTKNFKTKS QDTSCSFEED QQVGCDTLPA ELVSSPSHEK YVDSGGGAMN NILQLHHHYN  240
FACKQEISVD DYNAHVHDPF VENLHHLQEL HRSLEGSTNH PLAPCSSSTF RSQQQLSRMN  300
SRDHENYSVA PAFHHGESSL REFDETRPNV TQDGSLCSLN FPATYQGEDF WTLESARASL  360
RRDQTLADMT CHVHLKRGTT DHLSASHHEN LVHLWNVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-41913915140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980870.0AB898087.1 Physcomitrella patens PpVNS7 mRNA for NAC transcription factor PpVNS7, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366292.10.0NAC domain-containing protein 76-like
RefseqXP_024366293.10.0NAC domain-containing protein 76-like
TrEMBLX5IAY90.0X5IAY9_PHYPA; NAC transcription factor PpVNS7
STRINGPP1S6_458V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.16e-70NAC 007
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]