PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_13260V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 448aa MW: 48734.5 Da PI: 6.5739 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 259 | 309 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g++ AeIrdp ++g +r++lg+f+taeeAa+a+++a++++++ Pp3c26_13260V3.2.p 259 HFRGVRRRP-WGKFPAEIRDPAKRG--ARVWLGTFDTAEEAAAAYDHAALRMRK 309 69*******.**********97765..*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.64E-17 | 258 | 317 | No hit | No description |
Pfam | PF00847 | 2.4E-12 | 259 | 309 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 259 | 318 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.591 | 259 | 317 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-32 | 259 | 323 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 259 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 260 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 283 | 299 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MESVICEAVE GVETWQGYGQ PKQTKMFSWK ALSELMTREQ CDAAVIRGMQ VLESLNEYQF 60 QGRDDEGLAS SNEDFSTNNF INDNSQFRYA PGISPSSSPK LTSCATFFSP LGSTGGSAGS 120 QAESGHEYSR VAASEYNPGT ELPHAGMEVL SIGAESNGYH SENDVWTPED YAEDVLPARN 180 DDYVNQHDRS PPLSDTNDFR PNDIIYDTQG WGKMATSTVY EIHQVVGNPN SPYTRASEHE 240 AASINSQQQE CALASGLQHF RGVRRRPWGK FPAEIRDPAK RGARVWLGTF DTAEEAAAAY 300 DHAALRMRKS RALLNFPLKA TSALSNPAMF PPAPKTSITS RGYRQRSTSI SPTTTAVAAA 360 SISTSASPPS QPPSHRNTHW QQARHPQLQK STYSTNVNTH SYIAKQIQMS IATSSNPTHS 420 SSGYIGGGGG GQSVNYLLRT TSSPQCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-29 | 258 | 319 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366706.1 | 0.0 | uncharacterized protein LOC112277993 | ||||
TrEMBL | A0A2K1ICW4 | 0.0 | A0A2K1ICW4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S6_391V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 3e-24 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_13260V3.2.p |