PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_13260V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 448aa    MW: 48734.5 Da    PI: 6.5739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_13260V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19259309255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g++ AeIrdp ++g  +r++lg+f+taeeAa+a+++a++++++
  Pp3c26_13260V3.1.p 259 HFRGVRRRP-WGKFPAEIRDPAKRG--ARVWLGTFDTAEEAAAAYDHAALRMRK 309
                         69*******.**********97765..*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.64E-17258317No hitNo description
PfamPF008472.4E-12259309IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21259318IPR016177DNA-binding domain
PROSITE profilePS5103223.591259317IPR001471AP2/ERF domain
SMARTSM003801.0E-32259323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-30259318IPR001471AP2/ERF domain
PRINTSPR003672.4E-10260271IPR001471AP2/ERF domain
PRINTSPR003672.4E-10283299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MESVICEAVE GVETWQGYGQ PKQTKMFSWK ALSELMTREQ CDAAVIRGMQ VLESLNEYQF  60
QGRDDEGLAS SNEDFSTNNF INDNSQFRYA PGISPSSSPK LTSCATFFSP LGSTGGSAGS  120
QAESGHEYSR VAASEYNPGT ELPHAGMEVL SIGAESNGYH SENDVWTPED YAEDVLPARN  180
DDYVNQHDRS PPLSDTNDFR PNDIIYDTQG WGKMATSTVY EIHQVVGNPN SPYTRASEHE  240
AASINSQQQE CALASGLQHF RGVRRRPWGK FPAEIRDPAK RGARVWLGTF DTAEEAAAAY  300
DHAALRMRKS RALLNFPLKA TSALSNPAMF PPAPKTSITS RGYRQRSTSI SPTTTAVAAA  360
SISTSASPPS QPPSHRNTHW QQARHPQLQK STYSTNVNTH SYIAKQIQMS IATSSNPTHS  420
SSGYIGGGGG GQSVNYLLRT TSSPQCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-29258319162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366706.10.0uncharacterized protein LOC112277993
TrEMBLA0A2K1ICW40.0A0A2K1ICW4_PHYPA; Uncharacterized protein
STRINGPP1S6_391V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-24ethylene responsive element binding factor 2